Nextstrain build for novel coronavirus SARS-CoV-2
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Jan 24, 2025 - Python
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nextstrain
Here are 24 public repositories matching this topic...
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
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Jan 23, 2025 - Python
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
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Jan 24, 2025 - Python
Nextstrain build for mpox virus
metadata bioinformatics pipeline pathogen phylogenetics genbank augur nextstrain auspice virus-evolution genomic-epidemiology monkeypox mpox
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Jan 21, 2025 - Python
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
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Jan 23, 2025 - Python
SARS-CoV-2 variant growth rates and frequency forecasts
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Jan 17, 2025 - Python
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Dec 20, 2024 - Python
the repository used to build West Nile Virus for nextstrain
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Jan 21, 2025 - Python
BA.2.86 project with Sigal lab
bioinformatics snakemake computational-biology phylogenetics nextstrain treetime sars-cov-2 virus-evolution genomic-epidemiology sars-cov-2-variants
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Nov 8, 2023 - Python
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
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Feb 17, 2024 - Python
Spike-only SARS-CoV-2 Nextstrain build
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Dec 13, 2023 - Python
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Nov 8, 2024 - Python
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Jan 9, 2025 - Python
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