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hds-sandbox / AlphaFold_Workshop

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Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret results, predict protein structures of interest. Technical requirements provided. Enhance your knowledge of protein folding and AlphaFold2's principles. Fam

bioinformatics deep-learning jupyter-notebook computational-biology ucloud protein-structure-prediction mmseqs2 alphafold colabfold protein-folding-prediction
  • Updated Aug 21, 2023
  • Jupyter Notebook

michaelscutari / protclust

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protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware data splitting to prevent sequence similarity bias in model evaluation, along with comprehensive protein embedding capabilities for feature generation.

machine-learning bioinformatics clustering computational-biology dataset-creation protein-sequences data-preprocessing mmseqs2 protein-analysis train-test-split sequence-embeddings
  • Updated Mar 21, 2025
  • Python

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