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Sep 16, 2017 - HTML
microbiota
Here are 47 public repositories matching this topic...
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
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Dec 18, 2017 - HTML
A set of R scripts for the analysis of microbial profiles
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Feb 7, 2018 - R
Microbiome Study of Lupus Patients
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May 3, 2018 - HTML
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Sep 17, 2018 - R
Repository for 16S paper
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Mar 29, 2019
Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.
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Aug 15, 2019 - C
Data and analysis code for the Indian gut microbiota study
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Apr 2, 2020 - R
Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL
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May 1, 2020 - R
Association Between Gut Microbiota and Hypertension
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Jun 24, 2020 - R
A summary of the scripts used in performing quality filtering and data analysis of Illumina high throughout bacterial sequences involved in this freshwater aquatic invertebrate microbiota study.
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Sep 17, 2020 - R
Notebooks and files necessary to replicate the graphs and analyses presented in the Preprint, doi: 10.1101/2020.09.29.20203638
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Oct 22, 2020 - HTML
Open-source opinionated Galaxy-based framework for microbiota analysis
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Jan 21, 2021 - HTML
Package Containing Utility-functions to Work with Microbiota-data.
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Feb 17, 2021 - R
This repo models the temporal dynamics of the cervicovaginal microbiome to identify targets that promote reproductive health
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Apr 18, 2021 - Jupyter Notebook
📓 Minimal cheatsheet for functions in the phyloseq R package
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May 8, 2021
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
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Jul 19, 2021 - R
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
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Jul 19, 2021 - R
Code for reproducing results in the paper: "Differential response of digesta- and mucosa-associated intestinal microbiota to dietary insect meal during the seawater phase of Atlantic salmon"
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Oct 12, 2021 - HTML
Meta-analysis on human gut microbiota in Colorectal cancer
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Nov 23, 2021 - HTML
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