microbiome R package
🦠 A comprehensive R package for deep mining microbiome
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
Various functions for analysis of microbial community data
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
The is mostly a wrapper tool using phyloseq and microbiome R packages.
A comprehensive and customizable R package for microbiome analysis.
Metagenomics calibration R package
Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
accessory functions for processing microbial community data
Do microbiome analysis with dada2 and phyloseq object
Microbiome Analysis Plotting and Visualization
Functions to manipulate and visualize microbial community data
A computational pipeline for high-resolution profiling of low abundance microbiome in clinical samples using whole genome shotgun sequencing
Mothur procedures for 16S and ITS analysis
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Microbiome Amplicon Analysis and Visualization
R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
Microbiome analysis for phosphate-defense interaction
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