analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
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Aug 1, 2021 - Python
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microarray
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UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images
cnn pytorch microarray image-segmentation unet unet-pytorch unet-image-segmentation unet-model unet2 microarray-image-segmentation-cnn microarray-deep-learning image-segmenation-unet
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Oct 4, 2019 - Python
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus
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May 27, 2021 - Python
Genomic data manipulation tool
bam-files bioinformatics genomics genome genetics microarray wgs genome-analysis whole-genome-sequencing sam-files cram-files
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Oct 6, 2024 - Python
bioTEA - A user friendly tool to perform transcript expression analysis
python linux docker microarray command-line-tool transcriptomics differential-gene-expression bioinformatics-tool
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Nov 13, 2024 - Python
A toolkit for navigating and analyzing gene expression datasets
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May 12, 2022 - Python
SparkRMA: Robust Multi-array Average (RMA) In Apache Spark
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Jun 8, 2018 - Python
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
python datascience microarray datasets preprocessing ncbi ncbi-geo ncbi-database geneexpression preprocess-dataset microarray-data-analysis
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Jul 28, 2020 - Python
extract experimental metadata from GEO xml files
rna-seq geo computational-biology microarray public-data single-cell rna-seq-analysis metadata-extraction
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Dec 8, 2023 - Python
Tuberculosis@LOG and NPR, Macrophage gene expression time series.
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Oct 25, 2017 - Python
CRISPR-Cas9 Excision Therapy Suitability
bioinformatics python3 microarray crispr-analysis crispr crispr-target crispr-cas9 microarray-design
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Jun 29, 2018 - Python
CGI server for searching and visualizing array database
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Jan 15, 2019 - Python
Differential Expression Analysis Pipeline
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Aug 22, 2024 - Python
Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.
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May 26, 2022 - Python
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