An R-shiny package to analyse and visualise fungal gene expression data

Code to reproduce analyses of mouse cortical gradients

Agglomerative based clustering on gene expression dataset

Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas

Fit your oversized data.frame to your console width.

A biclustering library with datasets, evaluation measures and a benchmarking framework

RNA-seq reads to gene counts

DPre is a bioinformatic tool that enables the user to explore cell type conversion/ differentiation experiments. DPre may take the expression or the differentially regulated genes of the samples to rate transcriptional similarity with a reference dataset, the targets.

The Cancer Genome Atlas datbase | Cancer Classification | Deep Learning | CNN

This is the R code to extract Gene Expression Profiles of particular genes from GEO (Gene Expression Omnibus) datasets.

Metabolic subtyping of tumors from gene expression data

An interactive Streamlit app for processing and visualizing GEO data from NCBI's Gene Expression Omnibus.

Require one command line! Generate nine common RNAseq figures from RNAseq result table by python.

Predict the samplesizes for certain errorrates for statistical classifiers

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.

HRD200: Machine learning model to predict patient HRD status using gene expression data

This project was conducted for the Stanford BioHacks hackathon.

Implementation code for evaluating COMET approach on various simulation datasets