Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.

Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.

EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl

Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.

Material for the 3MC Course on Epidemiological Modelling held in South Africa in April 2022

Tutorials on math epidemiology and epidemiology informed deep learning methods

3MC - African Mathematical School on Mathematical Modeling in Biology

Codes for Paper "Discovering first-principle behavior change transmission models by deep learning methods, Pengfei Song, Yanni Xiao, Jianhong Wu."

A visual tool (HTML / Javascript) to interact with compartmental models like SIR and SEIR

Slides and code for a September 2023 course on Mathematical Epidemiology

Resources about projects on mathematical biology.

Personal page of Julien Arino

Material for my lectures as part of the OMNI/RÉUNIS course