loss-of-heterozygosity

Here are 3 public repositories matching this topic...

deepomicslab / SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens

Updated Sep 25, 2024
C++

wwoskie / HaploGone

Star

A tool for loss of heterozygosity (LOH) detection

bioinformatics-tool loss-of-heterozygosity

Updated May 26, 2024
Jupyter Notebook

svm-zhang / lohhla-mod

Star

Modernized HLALOH, a HLA loss of heterozygosity detection algorithm

hla oncology immuno-oncology loss-of-heterozygosity

Updated Sep 1, 2024
R

Improve this page

Add a description, image, and links to the loss-of-heterozygosity topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the loss-of-heterozygosity topic, visit your repo's landing page and select "manage topics."

Learn more

Provide feedback

Saved searches

Use saved searches to filter your results more quickly