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@deepomicslab

DeepOmics Lab

Focus on Bioinformatics Toolkits Development
README.md

Hi there 👋

Welcome to DeepomicsLab!

Popular repositories Loading

  1. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 40 11

  2. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 39 7

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 19

  4. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 13 1

  5. SpecHap SpecHap Public

    C++ 12 3

  6. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

Repositories

Showing 10 of 63 repositories
  • CASCAT Public
    deepomicslab/CASCAT’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 7, 2025
  • Genome-wide-coverage-profiling Public
    deepomicslab/Genome-wide-coverage-profiling’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 7, 2025
  • SpecImmune Public

    Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.

    deepomicslab/SpecImmune’s past year of commit activity
    F* 6 MIT 0 0 0 Updated Feb 5, 2025
  • SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

    deepomicslab/SpecHLA’s past year of commit activity
    C++ 40 MIT 11 8 0 Updated Feb 4, 2025
  • mrnadesign_web Public
    deepomicslab/mrnadesign_web’s past year of commit activity
    Vue 0 0 0 0 Updated Feb 4, 2025
  • mrnadesign_api Public
    deepomicslab/mrnadesign_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 4, 2025
  • TCREmbedding Public
    deepomicslab/TCREmbedding’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Feb 1, 2025
  • StrInt Public
    deepomicslab/StrInt’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 26, 2025
  • AffMB Public

    AffMB: affinity maturation of B-cell receptors

    deepomicslab/AffMB’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 24, 2025
  • TCRsep Public
    deepomicslab/TCRsep’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 23, 2025
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Most used topics

hla-typing nanopore