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DeepOmics Lab

Focus on Bioinformatics Toolkits Development

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  1. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 40 7

  2. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 39 9

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 18

  4. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 13 1

  5. SpecHap SpecHap Public

    C++ 12 3

  6. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

Repositories

Showing 10 of 58 repositories
  • deepomicslab/mrnadesign_web’s past year of commit activity
    Vue 0 0 0 0 Updated Dec 16, 2024
  • deepomicslab/mrnadesign_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 16, 2024
  • SCOIT Public

    SCOIT is an implementation of a probabilistic tensor decomposition framework for single-cell multi-omics data integration.

    deepomicslab/SCOIT’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Dec 12, 2024
  • DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    deepomicslab/DeepHost’s past year of commit activity
    Python 18 0 0 0 Updated Dec 12, 2024
  • SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    deepomicslab/SeCNV’s past year of commit activity
    Python 10 2 3 0 Updated Dec 12, 2024
  • Graphage Public

    This is the repository for GraphPhage, a phage analysis tool that integrates phage and ICE discrimination, phage integration site prediction, phage lifestyle prediction, and phage host prediction.

    deepomicslab/Graphage’s past year of commit activity
    Python 8 1 0 0 Updated Dec 12, 2024
  • GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    deepomicslab/GCNFrame’s past year of commit activity
    Python 40 MIT 7 1 0 Updated Dec 12, 2024
  • SPIDER Public
    deepomicslab/SPIDER’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 5, 2024
  • CERNATAX Public

    Detecting ceRNA network mRNA-miRNA-lncRNA triplet axis

    deepomicslab/CERNATAX’s past year of commit activity
    Python 1 0 0 0 Updated Nov 23, 2024
  • TCRclub Public
    deepomicslab/TCRclub’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 20, 2024

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