jaspar

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asntech / pyjaspar

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

transcription-factors gene-regulation transcription-factor-binding motif-discovery jaspar motifs tf-binding-motif

Updated Mar 23, 2024
Python

Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.

python api transcription-factors python3 dna ncbi dna-sequences jaspar transcription-factor webtools iupac transcription-factor-binding-site streamlit promoter-sequences responsive-elements terminator-sequences

Updated Dec 20, 2024
Python

mbelmadani / motifgp

Star

Motif discovery for DNA sequences using multiobjective optimization and genetic programming.

python bioinformatics transcription-factors motif dna genetic-programming chip-seq regular-expressions strongly-typed transcription-factor-binding pareto-front dna-sequences sequences nsga-ii multiobjective-optimization network-expressions motif-discovery deap jaspar

Updated Jul 24, 2018
Python

Sameerpython / Transcription-Factors

Star

python transcription-factors jaspar inference-profile

Updated Jan 4, 2024
Python

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