Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.

Calculation of tumor immune dysfunction, exclusion, and TIDE scores.

CITE-seq profiling of human PBMCs at baseline and activation conditions

Companion scripts for my PhD thesis in Bioinformatics.

Describe immune reconstitution in Multiple Sclerosis using mass cytometry data

Studying the sex differences in the immune response of plasmacytoid dendritic cells (pDCs) under different treatment conditions.