Cluster Investigation & Virus Epidemiology Tool
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Updated
May 26, 2021 - Python
Cluster Investigation & Virus Epidemiology Tool
Automated genomic analysis of SARS-CoV-2 sequence data
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
BA.2.86 project with Sigal lab
Efficiently store FASTA sequences in sqlite compressed with sidecar zstd dictionary
Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263
Official place for proposals and details around monkeypox virus lineage designations
Nextstrain build for mpox virus
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