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drop-seq

Here are 7 public repositories matching this topic...

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

Updated Jan 11, 2023
Python

nunofonseca / fastq_utils

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

validation ngs sequencing scrna-seq umi single-cell fastq high-throughput-sequencing barcodes 10x drop-seq fastq-files dge umi-count fastq-filterpair digital-gene-expression fastq-validation

Updated Jul 17, 2024
C

CTR-BFX / 2018_Bacon_Charnock-Jones

Bacon, W.A., Hamilton, R.S., Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Front. Immunol., 9:2523 https://doi.org/10.3389/fimmu.2018.02523

drop-seq single-cell-rna-seq t-cells

Updated Oct 18, 2019
R

sirusb / 2CLike_analysis

Some of the mapping and normalization scripts used in our NCB paper PMID:31209294

repeats drop-seq single-cell-rna-seq pluripotency

Updated Jan 24, 2021
Groovy

seb-mueller / simulate-rnaseq-reads

Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)

bioinformatics rna-seq python3 transcriptome single-cell fastq drop-seq

Updated Dec 5, 2019
Python

martinholub / DroNc-seq

Workflow for data analysis of DroNc-seq Data

python bash bioinformatics rna-seq snakemake r single-cell drop-seq

Updated Feb 23, 2019
HTML

JulianSpagnuolo / adtseq

adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data

scrna-seq 10x 10x-genomics scrnaseq drop-seq dropseq dropseqtools scrna-seq-analysis citeseq cite-seq

Updated Jun 21, 2019
C++

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