The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.
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Updated
Apr 1, 2024 - R
The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.
CUSO Microbiome analysis workshop 2020
Reconstructing a dada2 pipeline with batch processing using an OOP design
Code and repository links for Klein & Frühe et al. 2024
DADA2 pipeline for nitrogenase (nifH) amplicon sequences (Illumina paired-end)
Workflow stages and data for Morando, Magasin et al. 2024
A workflow for processing CCS reads of AMF to ASVs using DADA2
Accurate sample inference from amplicon data with single nucleotide resolution
En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
A pipeline to analyse marine fish amplicon data
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
Processing NEON soil microbe marker gene sequence data into ASV tables.
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