Scripts and procedures for detecting positively selected genes and codons in primates

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.

fastcodeml inside a docker container

Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs

A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.

dN/dS calculation based on codeml, fastcodeml and slimcodeml

FastScreen: a Compi pipeline for Fast Screening of PSS (Positively Selected Sites).

Automatic Detection of Positively Selected Sites