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12 public repositories
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An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
A statistical approach for clonal deconvolution in cancer using longitudinal NGS data
Updated
Jul 29, 2020
Jupyter Notebook
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
Zhian Kamvar's Ph. D. dissertation from Oregon State University
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
R package for clonal deconvolution
Detail WGS data simulation
Updated
Aug 25, 2020
Python
Reopsitory with raw data and code to analyse the relationship between environmental conditions and clonality in Lepidium draba.
PhylogicNDT dockcer for clonal evolution analysis
Updated
Oct 27, 2022
Shell
Genomic decomposition and reconstruction of non-tumor diploid subclones
Updated
Jan 9, 2024
Jupyter Notebook
R library for the analysis of partially clonal populations of polyploid individuals
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