Comparison of Hi-C Experiments using Structural Similarity.
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Jul 18, 2023 - Python
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chromatin-organisation
Here are 7 public repositories matching this topic...
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
hdf5 hi-c genome-sequencing bioconductor-packages bioconductor-package chromatin-structure chromatin-organisation
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Sep 5, 2023 - R
Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a novel computational algorithm designed for systematic identification of structural differences in chromatin-contact maps. Using CHESS, the same group …
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May 15, 2023 - Python
The code from the paper "Benchmark of software tools for prokaryotic chromosomal interaction domain identification"
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Oct 11, 2020 - Python
RB represses cohesin-dependent loop formation and safeguards E2F-independent transcription
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Sep 29, 2024 - Jupyter Notebook
WIP. This project aims to quantify the information in genome architecture data. An extensive chromatin toymodel is used for internal method development
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Feb 7, 2024 - Python
a tool for the analysis of multiplexed FISH (Fluorescence In Situ Hybridization) data
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Aug 2, 2024 - Jupyter Notebook
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