Here are
18 public repositories
matching this topic...
A single-cell RNAseq pipeline for 10X genomics data
Updated
Nov 5, 2024
Nextflow
simplified cellranger for long-read data
Updated
Sep 18, 2024
Python
scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR
Updated
Apr 26, 2023
HTML
Nextflow pipeline wrapper for executing Cell Ranger
Updated
Mar 8, 2022
Nextflow
WDLized Cell Ranger Cell Plex
10x Cell Ranger Docker Image
Updated
Sep 2, 2021
Shell
Updated
Mar 10, 2022
Python
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH (SunHao) .
A Haskell script that takes in a configuration YAML to create and launch Cell Ranger count and/or vdj runs via LSF bsub commands accordingly.
Updated
Mar 23, 2021
Haskell
Updated
Jun 13, 2023
Shell
WDLized Cell Ranger V(D)J
Basic scRNA-seq analysis in Seurat using GBM data
V(D)J T Cell and B Cell Analysis with cellranger vdj
Updated
Feb 4, 2023
Shell
Repository of the master project in Bioinformatics at Lund University
Updated
Jan 16, 2023
Jupyter Notebook
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
Updated
Jan 27, 2022
Python
A Snakemake workflow for analysing single cell data obtained from Cell ranger platform using Seurat package
Updated
Jun 14, 2024
Python
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