A tool for semi-automatic cell type classification
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Updated
Apr 25, 2025 - Python
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cell-type-classification
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AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection
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Jul 7, 2022 - Python
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
deep-learning annotation scrna-seq transcriptomics single-cell cell-type-classification gnn graph-neural-network reference-free
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Jul 6, 2023 - Python
scPretrain: Multi-task self-supervised learning for cell type classification
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Dec 24, 2021 - Python
Supervised cell type identification for scATAC-seq data
bioinformatics single-cell cell-type-classification supervised-classification-methods cell-type-identification celltype-annotation
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Aug 23, 2023 - Python
A pipeline to predict risk genes, implicated cell types and drugs for repurposing based on known risk genes (derived from GWAS) for complex traits.
machine-learning gwas genomics drug-discovery drug-repurposing diseases alzheimers-disease schizophrenia cell-type-classification gwas-pipeline disease-prediction irritable-bowel-syndrome cell-type-matching inflammatory-bowel-disease cell-type-gene-expression-analysis
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Feb 2, 2023 - Python
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