Complete Matlab pipeline for large scale calcium imaging data analysis
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Jul 4, 2023 - MATLAB
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calcium-imaging
Here are 32 public repositories matching this topic...
Matlab routines for online non-rigid motion correction of calcium imaging data
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May 29, 2022 - MATLAB
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
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Nov 14, 2024 - MATLAB
Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
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Feb 26, 2020 - MATLAB
Flow-Registration toolbox for 2P motion compensation
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Jul 26, 2024 - MATLAB
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
image-processing calcium-imaging dictionary-learning graph-signal-processing calcium-imaging-analysis widefield-microscopy dendritic-imaging
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Nov 1, 2023 - MATLAB
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
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May 23, 2024 - MATLAB
Signal Processing Toolbox for Calcium Imaging Data
processing clustering model signal-processing sparse signal neurons network-analysis raster-data calcium-imaging imaging deconvolution calcium denoising wavelets based neural-data model-based algorithms-matlab neural-ensembles
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Feb 8, 2024 - MATLAB
Drawing ROIs with a non-graphical user interface
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Jul 24, 2024 - MATLAB
An open-source automated surgical instrument for microendoscope implantation
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Nov 18, 2021 - MATLAB
interactive analysis of two-photon calcium imaging data
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Oct 4, 2019 - MATLAB
Automated Cell Segmentation by Adaptive Thresholding (ACSAT)
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Sep 20, 2018 - MATLAB
Complete Matlab pipeline for matching in vivo recorded cells post hoc in histology
matlab calcium-imaging immunohistochemical-images miniscope multimodal-image-registration histology-images neuronal-subtypes
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Jan 22, 2021 - MATLAB
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
neuroscience electrophysiology calcium-imaging 2-photon neurophysiology patch-clamp 2p-imaging prairie-view patchclamp glutamate-uncaging 2p-uncaging 2p-glutamate-uncaging
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Dec 9, 2024 - MATLAB
Collection of LabView & Matlab tools for simultaneous calcium & fMRI measurements
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Jul 24, 2018 - MATLAB
Toolbox for fast, variational 1D alignment
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Apr 8, 2021 - MATLAB
Analysis pipeline for high-speed, high-resolution microscopy datasets.
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Nov 1, 2024 - MATLAB
Suite of MATLAB algorithms (recommended to be used with App Designer GUI) for the analysis and coincidence detection of local field sharp wave ripples (SWRs), local field oscillations (theta, gamma, etc.), spikes (SWR coincidence and spike-phase coupling), post-synaptic currents (PSCs), and calcium transients. Written in MATLAB 2022a Update 4
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Oct 22, 2023 - MATLAB
Basic toolbox for analysis of in vivo 2-photon data. Originally written at Glenn Turner's lab, CSHL, when I was working with flies.
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Jul 22, 2020 - MATLAB
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
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Dec 21, 2020 - MATLAB
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