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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 653 377

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 330 84

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 317 83

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 255 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 150 95

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 120 22

Repositories

Showing 10 of 194 repositories
  • sciware-intern-mentors Public

    Guidance from sciware for summer intern mentors at Flatiron

    flatironinstitute/sciware-intern-mentors’s past year of commit activity
    1 Apache-2.0 0 0 0 Updated Apr 11, 2025
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 1 0 0 Updated Apr 11, 2025
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 8 MIT 5 7 9 Updated Apr 11, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 95 MIT 9 114 (3 issues need help) 3 Updated Apr 11, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 42 Apache-2.0 1 11 2 Updated Apr 11, 2025
  • clair Public

    Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

    flatironinstitute/clair’s past year of commit activity
    C++ 16 Apache-2.0 2 1 0 Updated Apr 10, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 330 84 47 (3 issues need help) 8 Updated Apr 10, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 653 GPL-2.0 377 88 (1 issue needs help) 11 Updated Apr 9, 2025
  • cephdu Public

    A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling

    flatironinstitute/cephdu’s past year of commit activity
    Rust 2 MIT 0 9 0 Updated Apr 9, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 46 MIT 4 1 4 Updated Apr 9, 2025
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