2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
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Updated
Dec 21, 2020 - MATLAB
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
read and analyse 2 photon images from ScanImage
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)
PKGBUILD of CaImAn for Archlinux
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
Code for Important Processing Steps For .Tiff or .Raw Video Files Acquired From 2-Photon Imaging System + Completely Automated and With NWB Schema (.HDF5) Capability
Examples illustrating basic stages of analyzing calcium imaging data
Simple Python scanning software for demo purposes
Flow-Registration toolbox for 2P motion compensation
Simple MATLAB scanning software for demo purposes
Utility functions for data generated with ThorImage and ThorSync.
Serial-section automated anatomy extension for ScanImage
utility functions for analyzing (fly) calcium imaging data
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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