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Turn phyloseq from an Imports to a Suggests #171

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wants to merge 15 commits into from
Closed

Turn phyloseq from an Imports to a Suggests #171

wants to merge 15 commits into from

Commits on Nov 29, 2023

  1. use the smaller dataset for the example to avoid example code taking … 

    …>5 seconds to run
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    svteichman committed Nov 29, 2023
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Commits on Dec 7, 2023

  1. try to change phyloseq into a Suggests

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    svteichman committed Dec 7, 2023
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  2. lowering computational cost of examples (note from r cmd check that t… 

    …hese functions are taking >5 seconds to check)
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    svteichman committed Dec 7, 2023
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  3. reduce time for HDIbetabinom() example and add documentation of cha… 

    …nged examples
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    svteichman committed Dec 7, 2023
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Commits on Dec 8, 2023

  1. updating tests to use phyloseq conditionally, updating vignette to ev… 

    …aluate chunks based on phyloseq availability, adding a second vignette that doesn't use phyloseq
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    svteichman committed Dec 8, 2023
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  2. update readme to reflect additional vignette and change mistake in na… 

    …me of new vignette
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    svteichman committed Dec 8, 2023
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Commits on Jan 9, 2024

  1. Make all examples run without relying on phyloseq

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    svteichman committed Jan 9, 2024
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  2. fix mistake in example for waldt()

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    svteichman committed Jan 9, 2024
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  3. Add dataframes for three major parts of phyloseq object soil_phylo

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    svteichman committed Jan 9, 2024
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  4. move all tests that use phyloseq into one testing file where required… 

    … phyloseq objects are created
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    svteichman committed Jan 9, 2024
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Commits on Jan 10, 2024

  1. saving ibd data from phyloseq object as three separate data frames

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    svteichman committed Jan 10, 2024
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  2. using phyloseq to create phyloseq object from data frames in vignette… 

    … that uses phyloseq. A few edits to the vignette that does not use phyloseq.
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    svteichman committed Jan 10, 2024
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  3. deleting phyloseq objects from the data folder as well as documentation

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    svteichman committed Jan 10, 2024
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  4. fix issues with examples and data still referencing phyloseq objects

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    svteichman committed Jan 10, 2024
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  5. Merge pull request #1 from svteichman/suggest_phyloseq 

    Suggest phyloseq
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    svteichman committed Jan 10, 2024
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