Add normalization check for gridded PSF library #552
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Resolves #358
This PR adds a simple normalization check to the gridded PSF library read in by Mirage. This will help to identify any improperly normalized libraries. The check expects that the total signal in a PSF divided by the square of the oversampling factor should be roughly 1.0.
I currently have the lower and upper limits for a "good" normalization set at 0.8 and 1.0. @mperrin does that make sense? I'm wondering if having a lower limit makes sense at all.
Also, the libraries for ITM images will never fail this test, as the function that reads in the ITM library file currently manually normalizes the total signal to 1.0.