Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

sourmash v4.8.13 release #3481

Closed
11 of 15 tasks
ctb opened this issue Jan 11, 2025 · 2 comments
Closed
11 of 15 tasks

sourmash v4.8.13 release #3481

ctb opened this issue Jan 11, 2025 · 2 comments

Comments

@ctb
Copy link
Contributor

ctb commented Jan 11, 2025 •
edited
Loading

Release candidate testing:

  • Command line tests pass for a release candidate
  • All eight release candidate wheels are built

Releasing to PyPI:

  • RC tag(s)s deleted on github
  • Release tag cut
  • Release notes written
  • All eight release wheels built
  • Release wheels uploaded to pypi
  • tar.gz distribution uploaded to pypi

After release to PyPI and conda-forge/bioconda packages built:

Optional but recommended:

  • PR submitted to update pyodide version
  • PR submitted to update spack version
@ctb ctb mentioned this issue Jan 11, 2025
Merged
@ctb
Copy link
Contributor Author

ctb commented Jan 11, 2025

release PR: #3482

ctb added a commit that referenced this issue Jan 11, 2025
@ctb
MRG: 4.8.13 release branch (#3482)
81ca6ff 
Release issue: #3481

----

NOTE: This release adds basic support for skipmers, but they are not
yet fully supported.

Minor new features:

* add genbank plant db to docs (#3429)
* add skipmer capacity to sourmash python layer via ffi (#3446)
* add skipmers; switch to reading frame approach for translation,
skipmers (#3395)
* additional moltype specification needed for `sig downsample` with
skipmers (#3457)
* update with misc animal genomes (#3422)

Cleanup and documentation updates:

* add comment about semver and column headings (#3433)

Developer updates:

* Deps: update to rocksdb 0.23 (#3456)
* Refactor: Use to_writer/from_reader across the codebase (#3443)
* adjust `Signature::name()` to return `Option<String>` instead of
`filename()` and `md5sum()` (#3434)
* bump version to 4.8.13-dev (#3474)
* fix comment in _set_num_scaled (#3451)
* propagate zipfile errors (#3431)
* update rust CHANGELOG in preparation for r0.18.0 (#3450)
* CI: github actions updates (#3476)

Dependabot updates:

* Bump itertools from 0.13.0 to 0.14.0 (#3471)
* Bump needletail from 0.6.0 to 0.6.1 (#3427)
* Bump proptest from 1.5.0 to 1.6.0 (#3437)
* Bump roaring from 0.10.7 to 0.10.8 (#3423)
* Bump roaring from 0.10.8 to 0.10.9 (#3438)
* Bump serde from 1.0.215 to 1.0.216 (#3436)
* Bump serde from 1.0.216 to 1.0.217 (#3464)
* Bump serde_json from 1.0.133 to 1.0.134 (#3453)
* Bump statrs from 0.17.1 to 0.18.0 (#3426)
* Bump tempfile from 3.14.0 to 3.15.0 (#3472)
* Bump thiserror from 2.0.3 to 2.0.6 (#3425)
* Bump thiserror from 2.0.6 to 2.0.7 (#3435)
* Bump thiserror from 2.0.7 to 2.0.8 (#3448)
* Bump thiserror from 2.0.8 to 2.0.9 (#3452)
* Update maturin requirement from <1.8.0,>=1 to >=1,<1.9.0 (#3465)
* [pre-commit.ci] pre-commit autoupdate (#3428)
* [pre-commit.ci] pre-commit autoupdate (#3439)
* [pre-commit.ci] pre-commit autoupdate (#3454)
* [pre-commit.ci] pre-commit autoupdate (#3473)
This was referenced Jan 11, 2025
Closed
Closed
@ctb
Copy link
Contributor Author

ctb commented Jan 15, 2025

closing in favor of #3494.

@ctb ctb closed this as completed Jan 15, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@ctb