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perf: bump vembrane wrappers to latest version (#3269)
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### QC
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* [x] I confirm that I have followed the [documentation for contributing
to
`snakemake-wrappers`](https://snakemake-wrappers.readthedocs.io/en/stable/contributing.html).

While the contributions guidelines are more extensive, please
particularly ensure that:
* [x] `test.py` was updated to call any added or updated example rules
in a `Snakefile`
* [x] `input:` and `output:` file paths in the rules can be chosen
arbitrarily
* [x] wherever possible, command line arguments are inferred and set
automatically (e.g. based on file extensions in `input:` or `output:`)
* [x] temporary files are either written to a unique hidden folder in
the working directory, or (better) stored where the Python function
`tempfile.gettempdir()` points to
* [x] the `meta.yaml` contains a link to the documentation of the
respective tool or command under `url:`
* [x] conda environments use a minimal amount of channels and packages,
in recommended ordering


<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

- **New Features**
- Updated the `vembrane` package from version `1.0.6` to `1.0.7`,
incorporating new features and improvements.
- **Bug Fixes**
- Various package dependencies have been upgraded to their latest
versions, enhancing stability and performance.
- **Chores**
- Updated package URLs and versions in environment files to ensure
compatibility with the latest releases.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->
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johanneskoester committed Sep 24, 2024
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39 changes: 21 additions & 18 deletions bio/vembrane/filter/environment.linux-64.pin.txt
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# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
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https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-4_cp310.conda#26322ec5d7712c3ded99dd656142b8ce
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Expand All @@ -36,18 +39,18 @@ https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-h4ab18f5_6.conda#559
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2 changes: 1 addition & 1 deletion bio/vembrane/filter/environment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- default
- nodefaults
dependencies:
- vembrane =1.0.6
- vembrane =1.0.7
39 changes: 21 additions & 18 deletions bio/vembrane/table/environment.linux-64.pin.txt
Original file line number Diff line number Diff line change
Expand Up @@ -3,30 +3,33 @@
# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
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Expand All @@ -36,18 +39,18 @@ https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-h4ab18f5_6.conda#559
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https://conda.anaconda.org/conda-forge/noarch/setuptools-74.1.2-pyhd8ed1ab_0.conda#56c9c11d004428e81d02eeb730fc6336
https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
https://conda.anaconda.org/conda-forge/noarch/sortedcontainers-2.4.0-pyhd8ed1ab_0.tar.bz2#6d6552722448103793743dabfbda532d
https://conda.anaconda.org/conda-forge/noarch/wheel-0.44.0-pyhd8ed1ab_0.conda#d44e3b085abcaef02983c6305b84b584
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https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-23_linux64_openblas.conda#2af0879961951987e464722fd00ec1e0
https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyhd8ed1ab_0.conda#6721aef6bfe5937abe70181545dd2c51
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https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-24_linux64_openblas.conda#fd540578678aefe025705f4b58b36b2e
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https://conda.anaconda.org/bioconda/noarch/vembrane-1.0.6-pyhdfd78af_0.tar.bz2#24be610f750da947a19886560796b26d
https://conda.anaconda.org/bioconda/noarch/vembrane-1.0.7-pyhdfd78af_0.tar.bz2#3da59dd10b42b6dd24e02001eacda375
2 changes: 1 addition & 1 deletion bio/vembrane/table/environment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- default
- nodefaults
dependencies:
- vembrane =1.0.6
- vembrane =1.0.7

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