Rename volume scripts

[arnaudbore]

scil_apply_transform_to_image.py - > scil_volume_apply_transfo.py
scil_count_non_zero_voxels.py -> scil_volume_count_non_zero_voxels.py
scil_crop_volume.py -> scil_volume_crop_.py
scil_flip_volume.py -> scil_volume_flip.py
scil_image_math.py -> scil_volume_math.py
scil_remove_outliers_ransac.py -> scil_volume_remove_outliers_ransac.py
scil_resample_volume.py -> scil_volume_resample.py
scil_reshape_to_reference.py -> scil_volume_reshape_to_reference.py
scil_snr_in_roi.py -> scil_dwi_compute_snr.py

[pep8speaks]

Hello @arnaudbore, Thank you for updating !

There are currently no PEP 8 issues detected in this Pull Request. Cheers! 🍻

Comment last updated at 2023-12-04 22:07:48 UTC

[arnaudbore]

Build passed ! Good Job 🍻 !

[arnaudbore]

Build passed ! Good Job 🍻 !

[karanphil]

Spotted a small error in a legacy script. Not sure if volume should be replaced with image to have like scil_image_flip_volume.py or create the volume module instead of the volume_operations in the image module. Also, I understand the name scil_dwi_compute_snr.py, but it imports nothing from dwi.

[EmmaRenauld]

Spotted a small error in a legacy script. Not sure if volume should be replaced with image to have like scil_image_flip_volume.py or create the volume module instead of the volume_operations in the image module.

I think we prefer volume everywhere. It's clearer than image, which could be a picture. Do we want to change the image module to volume?

Also, I understand the name scil_dwi_compute_snr.py, but it imports nothing from dwi.

Indeed, the compute_snr function should go in dwi. It is now in volume_operations. But it takes as input the dwi, bval, bvec, so it is not appliable to any volume.

[arnaudbore]

Build passed ! Good Job 🍻 !

[arnaudbore]

Build passed ! Good Job 🍻 !

[frheault]

Has anyone ever used scil_volume_remove_outliers_ransac?