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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.
README.md

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 66 65

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 55 24

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 16

Repositories

Showing 10 of 59 repositories
  • dmri-explorer Public

    A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

    scilus/dmri-explorer’s past year of commit activity
    C++ 9 MIT 7 9 1 Updated Apr 23, 2025
  • tractometry_flow Public
    scilus/tractometry_flow’s past year of commit activity
    Nextflow 0 12 0 0 Updated Apr 23, 2025
  • nf-mouse_flow Public
    scilus/nf-mouse_flow’s past year of commit activity
    Nextflow 0 MIT 1 0 1 Updated Apr 23, 2025
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 66 65 37 14 Updated Apr 23, 2025
  • nf-pediatric Public

    nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/nf-pediatric’s past year of commit activity
    Nextflow 3 MIT 1 3 2 Updated Apr 16, 2025
  • nf-tractoflow Public
    scilus/nf-tractoflow’s past year of commit activity
    Nextflow 0 MIT 2 0 1 Updated Apr 15, 2025
  • rbx_flow Public
    scilus/rbx_flow’s past year of commit activity
    Nextflow 2 MIT 10 1 0 Updated Apr 15, 2025
  • noddi_flow Public
    scilus/noddi_flow’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Apr 14, 2025
  • freewater_flow Public
    scilus/freewater_flow’s past year of commit activity
    Nextflow 7 MIT 5 1 0 Updated Apr 14, 2025
  • nf-neuro Public

    nf-neuro is a nextflow neuroimaging library maintained by the SCIL team

    scilus/nf-neuro’s past year of commit activity
    Nextflow 10 GPL-3.0 16 12 7 Updated Apr 11, 2025
View all repositories

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