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fix: do not exit with exec permission error in ninja check (#626)
Also `cmake` check. As discussed in: https://github.com/orgs/scikit-build/discussions/1057 There may be times when we attempt to execute `ninja --version` from the ninja package in /tmp/, which may be mounted `noexec`. This result in a PermissionError. Carry on so we can inspect other ninja executables available.
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