Merge pull request #596 from satijalab/docs/runspca

Add concept to rdoc for RunSPCA

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: Seurat
-Version: 4.0.4.9000
+Version: 4.0.4.9001
 Date: 2021-08-27    
 Title: Tools for Single Cell Genomics
 Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

NEWS.md

@@ -1,6 +1,7 @@
 ## Unreleased
 ## Changes
 - Update documentation for `to.upper` parameter in `Load10X_Spatial()` ([#4576](https://github.com/satijalab/seurat/issues/4576))
+- Update concept tags for `RunSPCA()` ([#4978](https://github.com/satijalab/seurat/discussions/4987))
 
 ## Seurat 4.0.4 (2020-08-19)
 ## Added

R/dimensional_reduction.R

@@ -2311,6 +2311,7 @@ PrepDR <- function(
 #'
 #' @importFrom irlba irlba
 #'
+#' @concept dimensional_reduction
 #' @rdname RunSPCA
 #' @export
 RunSPCA.default <- function(
@@ -2352,6 +2353,7 @@ RunSPCA.default <- function(
 #' using the variable features for the Assay.
 #'
 #' @rdname RunSPCA
+#' @concept dimensional_reduction
 #' @export
 #' @method RunSPCA Assay
 #'
@@ -2386,6 +2388,7 @@ RunSPCA.Assay <- function(
 
 #' @param reduction.name dimensional reduction name, spca by default
 #' @rdname RunSPCA
+#' @concept dimensional_reduction
 #' @export
 #' @method RunSPCA Seurat
 #'