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416 Open 7,774 Closed
416 Open 7,774 Closed
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Issues list

Potential loss of information in SCT normalised data?
#9772 opened Mar 22, 2025 by dizhengao
Pseudobulk results in DESeq integer error in Seurat 5.2 bug Something isn't working
#9771 opened Mar 21, 2025 by rbutleriii
Discrepancy in log fold change values between FindMarkers and DESeq2 outputs for DE analysis
#9770 opened Mar 21, 2025 by dizhengao
BUG: BPcell + V4 rpca integration bug Something isn't working
#9769 opened Mar 21, 2025 by harper500
Feature Request: DoHeatmap is slowly,may be faster enhancement New feature or request
#9768 opened Mar 21, 2025 by Liripo
1
BUG: <SingleRasterMap() does not keep meta data of group correctly> bug Something isn't working
#9766 opened Mar 20, 2025 by ShannonTown
v5 reference mapping to multiple query objects
#9765 opened Mar 20, 2025 by lydiarck
BUG: Error with JoinLayers on Large Dataset: p[length(p)] cannot exceed 2^31-1 bug Something isn't working
#9763 opened Mar 19, 2025 by Xiaoqiang-Shi
Documentation: <Setting lambda value for HarmonyIntegration> documentation Error in documentation
#9762 opened Mar 19, 2025 by Pieros123-R
BUG: FastMNN integration can not using with SCT assay bug Something isn't working
#9758 opened Mar 19, 2025 by Abigailleelee
BUG: AggregateExpression creates wrong metadata if a column in group.by has only one value. bug Something isn't working
#9757 opened Mar 18, 2025 by dimitrios-pm
BUG: PseudobulkExpression ignores user-specified scale.factor argument bug Something isn't working
#9756 opened Mar 18, 2025 by anncfs
IntegrateEmbeddings: Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length
#9755 opened Mar 17, 2025 by VilainLab
1
BUG: <Errors using Seurat V5 on mouse 10x 5'RNAseq and TCRvdj> bug Something isn't working
#9754 opened Mar 16, 2025 by jasoncrucify
an unexpected umap result from Mapquery() when using sketch and BPCells documentation Error in documentation
#9753 opened Mar 16, 2025 by CampingOnSeabed
Some problems in SpatialFeaturePlot() function
#9750 opened Mar 14, 2025 by vicscott
what's the difference between the function "AggregateExpression()" and "Average.Expression()",they are leading to the same result?
#9747 opened Mar 13, 2025 by seekning
1
Problems reading Xenium data into Seurat (relative novice unsure if I am missing something)
#9746 opened Mar 12, 2025 by rebannjones
BUG: Given reference assay (SCT) has 7 reference sct models. Please provide a reference assay with a single reference sct model. bug Something isn't working
#9745 opened Mar 12, 2025 by Achiraa
BUG: VariableFeaturePlot() fails when performed on different assays bug Something isn't working
#9743 opened Mar 12, 2025 by gabrielnegreira
after harmnoy, the seurat cluster became like this, so what happened to the findcluster program?
#9736 opened Mar 9, 2025 by seekning
1
Documentation: Spatial mouse anterior vignette subset error documentation Error in documentation
#9715 opened Mar 1, 2025 by GCAT01
Can Seurat v5 integrate Multiome (scRNA-seq+scATAC-seq) and snmC-seq via scMT-seq as the bridge?
#9710 opened Feb 27, 2025 by YangLi-Bio
Updates to UMAP/uwot function enhancement New feature or request
#9709 opened Feb 26, 2025 by samuel-marsh
Feature Request: Vignettes section issue enhancement New feature or request
#9708 opened Feb 26, 2025 by abhilashdasari
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