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Update plotting capabilities and dataset restructure #178

Merged
merged 85 commits into from
Mar 21, 2024
Merged

Update plotting capabilities and dataset restructure #178

merged 85 commits into from
Mar 21, 2024

Commits on Jan 29, 2024

  1. Update plotting, descriptions and examples

    @NicolaCourtier
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  2. style: pre-commit fixes

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  3. Update notebooks

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  4. Update notebooks

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  5. Update legends

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  6. Add getitem and update dataset checks

    @NicolaCourtier
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  7. style: pre-commit fixes

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  8. Update test_dataset.py

    @NicolaCourtier
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  9. Add plotting tests

    @NicolaCourtier
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  10. Add test_plot_dataset

    @NicolaCourtier
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Commits on Feb 2, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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Commits on Feb 8, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  2. Update dataset check

    @NicolaCourtier
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  3. style: pre-commit fixes

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  4. Update UKF example plotting

    @NicolaCourtier
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Commits on Feb 9, 2024

  1. Revert file names

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  2. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  3. Re-implement change to BaseCost

    @NicolaCourtier
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  4. Separate off plot_parameters

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  5. style: pre-commit fixes

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  6. Move plot_parameters in init

    @NicolaCourtier
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  7. Update spm_electrode_design.ipynb

    @NicolaCourtier
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  8. Re-implement design changes to quick_plot

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Commits on Feb 16, 2024

  1. Update subplot widths, test_plotting dataset access, remove square br… 

    …ackets from plots as per SI standard, quick plot for varying length signals, add pybop.is_numeric and restore design cost exception for optimisation
    @BradyPlanden
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  2. Update pybop/plotting/plot_convergence.py 

    Co-authored-by: Brady Planden <55357039+BradyPlanden@users.noreply.github.com>
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  3. Update pybop/plotting/plot_cost2d.py 

    Co-authored-by: Brady Planden <55357039+BradyPlanden@users.noreply.github.com>
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  4. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  5. Update plot_cost2d.py

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Commits on Feb 19, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

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  2. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  3. Remove duplicate getitem

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Commits on Feb 21, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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Commits on Feb 22, 2024

  1. Add plotting support for notebook rendering, adds kaleido as dependancy

    @BradyPlanden
    BradyPlanden committed Feb 22, 2024
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  2. + diffevolution notebook

    @BradyPlanden
    BradyPlanden committed Feb 22, 2024
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  3. Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities

    @BradyPlanden
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  4. fix missed deletion during merge

    @BradyPlanden
    BradyPlanden committed Feb 22, 2024
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Commits on Feb 23, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  2. Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities

    @BradyPlanden
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  3. Update test_plots.py

    @NicolaCourtier
    NicolaCourtier committed Feb 23, 2024
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  4. Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities

    @BradyPlanden
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Commits on Feb 29, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  2. Merge branch 'develop' into 177-plotting-capabilities

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Commits on Mar 1, 2024

  1. Revamp model, problem, and cost object from numpy arrays to dictionar… 

    …y. Update tests, add base model classes to init, cleaner multi-signal interaction
    @BradyPlanden
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  2. Fix ukf examples, temporarily limits ukf to signal output model

    @BradyPlanden
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Commits on Mar 2, 2024

  1. default_variables to additional_variables w/ docstrings, updt. observ… 

    …er tests, dict output observer.evaluate()
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Commits on Mar 4, 2024

  1. Fix integration test logic, add gradient landscape plots, pin pytest … 

    …version due to breaking change in 8.1.0
    @BradyPlanden
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  2. Add tests for gradient plots, up coverage

    @BradyPlanden
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  3. Set default SciPyMinimize method to Nelder-Mead, clean-up repo

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Commits on Mar 7, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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Commits on Mar 8, 2024

  1. unicode fix for win notebooks, update prediction shape checks, remove… 

    … Discharge capacity as default additional_variable
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  2. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  3. Update spm_MLE example

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Commits on Mar 13, 2024

  1. Updt. cost2d/optim2d x0 shape/colour, revert conftest win platform un… 

    …icode, add infeasible unit test
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  2. Updt SciPy & BaseOptimiser for maximum iterations limit - fixes #237

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  3. add infeasible cost tests, remove redundant scipyminimise maxiter opt… 

    …ions check
    @BradyPlanden
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  4. Merge pull request #224 from pybop-team/177c-plotting-capabilities 

    Datatype restructure for optimisation objects
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Commits on Mar 14, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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  2. Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities

    @BradyPlanden
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Commits on Mar 15, 2024

  1. Updt grad descent hypers for likelihood tests, add tol arg to scipy o… 

    …ptimisers, pass optimiser final cost as is
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  2. Split kaleido dependancy to avoid windows hang

    @BradyPlanden
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  3. small refactors and cleanup

    @BradyPlanden
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  4. Updt changelog

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Commits on Mar 18, 2024

  1. Merge branch 'develop' into 177-plotting-capabilities

    @NicolaCourtier
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Commits on Mar 19, 2024

  1. updt coverage, bugfix sigma check/wrap

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  2. Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities

    @BradyPlanden
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  3. coverage, bugfix model.simulateS1

    @BradyPlanden
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  4. Merge pull request #198 from pybop-team/177b-plotting-capabilities 

    Additions to #177
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Commits on Mar 20, 2024

  1. Update to n_time_data and add two_signal test

    @NicolaCourtier
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  2. style: pre-commit fixes

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  3. Test standard plot and plot_trajectories

    @NicolaCourtier
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  4. Add test_with_ipykernel

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  5. style: pre-commit fixes

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  6. Re-add test_with_ipykernel

    @NicolaCourtier
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  7. Update test_plots.py

    @NicolaCourtier
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  8. Rename plot_cost2d as plot2d

    @NicolaCourtier
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  9. Merge plot_optim2d with plot2d

    @NicolaCourtier
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  10. Update scripts to plot2d

    @NicolaCourtier
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  11. Update notebooks to plot2d

    @NicolaCourtier
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  12. Update spm_MLE.py

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  13. Update filename to plot2d

    @NicolaCourtier
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  14. Rename plot_cost2d.py to plot2d.py

    @NicolaCourtier
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  15. Fix typo in error message

    @NicolaCourtier
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  16. Reduce init_soc in test_model_misparameterisation

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Commits on Mar 21, 2024

  1. Update ipykernel print to assert 

    Co-authored-by: Brady Planden <55357039+BradyPlanden@users.noreply.github.com>
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  2. Fix version check

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