Merge pull request #13 from prefixcommons/go-site-617

When deriving json-ld context from db-xrefs yaml, use new rdf_uri_pre…
prefixcommons · Apr 19, 2018 · ac00833 · ac00833
2 parents 7b5ff19 + b552c87
commit ac00833
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/bin/go-xrefs-to-context.py b/bin/go-xrefs-to-context.py
@@ -18,7 +18,12 @@ def main(fn):
                 if db in pm and pm[db] != url:
                     logging.warn("Replacing {} : {} -> {}".format(db, pm[db], url))
                 pm[db] = url
-
+
+    # overwrite if rdf_uri_prefix is known. See https://github.com/geneontology/go-site/issues/617
+    for p in prefixes:
+        if 'rdf_uri_prefix' in p:
+            pm[p['database']] = p['rdf_uri_prefix']
+
 
     obj = {'@context': pm}
     print(json.dumps(obj, indent=4))