[dataproc] fix pyfiles (#256)

populationgenomics · Dec 1, 2022 · f6126c4 · f6126c4
1 parent 61993f3
commit f6126c4
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/hail/python/hailtop/hailctl/dataproc/submit.py b/hail/python/hailtop/hailctl/dataproc/submit.py
@@ -45,9 +45,10 @@ def _filter_pyfile(fname: str) -> bool:
                 else:
                     for root, _, pyfiles_walk in os.walk(hail_script_entry):
                         for pyfile in pyfiles_walk:
-                            if os.path.isfile(pyfile) and _filter_pyfile(pyfile):
-                                zipf.write(os.path.join(root, pyfile),
-                                           os.path.relpath(os.path.join(root, pyfile),
+                            path = os.path.join(root, pyfile)
+                            if os.path.isfile(path) and _filter_pyfile(path):
+                                zipf.write(path,
+                                           os.path.relpath(path,
                                                            os.path.join(hail_script_entry, '..')))
             zipf.close()
             pyfiles = tfile