Merge pull request #83 from fmichonneau/add-score

add score to hard-coded Mus
phylotastic · Jun 17, 2023 · e4a9f53 · e4a9f53
2 parents 4170b61 + a561d78
commit e4a9f53
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/R/opentree_taxonomy_general.R b/R/opentree_taxonomy_general.R
@@ -50,7 +50,11 @@ tnrs_match.default <- function(input, reference_taxonomy = "ott", ...) { # enhan
     # cat("\n") # just to make the progress bar look better
     # hardcoding Mus:
     if (sum("mus" == tolower(input)) > 0) {
-      df["mus" == tolower(input), ] <- list("mus", "Mus (genus in Deuterostomia)", FALSE, 1068778, FALSE, "SIBLING_HIGHER", 3)
+      if (packageVersion("rotl") >= 3.1.0) {
+        df["mus" == tolower(input), ] <- list("mus", "Mus (genus in Deuterostomia)", FALSE, 1, 1068778, FALSE, "SIBLING_HIGHER", 3)
+      } else {
+        df["mus" == tolower(input), ] <- list("mus", "Mus (genus in Deuterostomia)", FALSE, 1068778, FALSE, "SIBLING_HIGHER", 3)
+      }
     }
     rownames(df)[1] <- "1"
     # df[is.na(df$unique_name),1] <- input[is.na(df$unique_name)]  # in case the unmatched input are dropped from final df