Owl Sim

Introduction

The OWLSim package provides the ability to do a number of standard semantic similarity methods and includes novel methods for combining these with dynamic selection of anonymous grouping classes.

Details

Running from command line

See:

• Sim2CLIExamples

Uses

• MouseFinder
• Monarch Initiative

Programmer Documentation

• owltools.sim2 Java API Docs

References

• Nicole L Washington, Melissa A Haendel, Christopher J Mungall, Michael Ashburner, Monte Westerfield, and Suzanna E. Lewis. Linking Human Diseases to Animal Models using Ontology-based Phenotype Annotation. PLoS Biology, 7(11), 2009) HTML
• Chen, C.-K., Mungall, C. J., Gkoutos, G. V., Doelken, S. C., Köhler, S., Ruef, B. J., Smith, C., et al. (2012). MouseFinder: Candidate disease genes from mouse phenotype data. Human mutation, 33(5), 858-66. doi:10.1002/humu.22051