Add option for catalog file #313
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jamesaoverton
requested changes
Jul 19, 2018
| * @param pattern wildcard pattern to match | ||
| * @return array of files | ||
| */ | ||
| private static File[] getFileByPattern(String pattern) { |
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Should be plural: getFilesByPattern
docs/global.md
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| ## Prefixes | ||
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| Terms in OBO and OWL are identified using <a href="https://en.wikipedia.org/wiki/Internationalized_resource_identifier" target="_blank">IRIs</a> (Internationalized Resource Identifiers), which generalize the familiar addresses for web pages. IRIs have many advantages, but one of their disadvantages is that they can be pretty long. So we have standard ways to abbreviate IRIs in a particular context by specifying **prefixes**. For example, Turtle files start with `@prefix` statements, SPARQL queries start with `PREFIX` statements, and JSON-LD data includes a `@context` with prefixes. |
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Please use normal Markdown links throughout, not HTML links. We'll assume that people know how to use their browsers by now, and can open links in new windows/tabs if they want to.
docs/global.md
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| ## XML Catalogs | ||
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| OWLAPI, Protègè, and ROBOT use XML catalogs to specify where import files are located when loading an ontology. By default, this catalog is called `catalog-v001.xml`. ROBOT assumes that a `catalog-v001.xml` file exists in the working directory and attempts to resolve imports based on that. Because Protègè also predicts that catalog, we recommend sticking to this standard. For more details, see <a href="https://protegewiki.stanford.edu/wiki/Importing_Ontologies_in_P41" target="_blank">Importing Ontologies in Protègè and OWL 2</a>. |
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Wrong accents, should be Protégé.
docs/global.md
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| --input edit.owl --output merged.owl | ||
| ``` | ||
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| If a catalog file is provided and cannot be located, the ontology will be loaded without a catalog file. Similarly, if you do not provide a `--catalog` and the `catalog-v001.xml` file does not exist in your working directory, the ontology will be loaded without a catalog file. Finally, if the catalog specifies an import file that does not exist, the command will fail. |
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Should be "If a catalog file is specified and cannot be located"
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| ## Error Messages | ||
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| ### JDON-LD Error |
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Should be JSON-LD Error. Will this error IRI work after renaming to global.md?
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Hmm. d4cbc6c passes |
jamesaoverton
approved these changes
Jul 23, 2018
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See #274