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@odomlab2

Odom Lab, German Cancer Research Center

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  1. sci-rocket sci-rocket Public

    Snakemake workflow for (pre-)processing sci-RNA-seq3 data

    Python 4 3

  2. Single-Mitosis-LSE Single-Mitosis-LSE Public

    R scripts and supplemental tables for Ginno et al., 2024

    R 1

  3. metadata-submission metadata-submission Public

    Track the metadata submission spreadsheet and related files

    Python

  4. molgenis-docker molgenis-docker Public

    Forked from molgenis/docker

    Dockerfiles and docker-compose for MOLGENIS

    Dockerfile

  5. snakemake-snpmasked-refgenome snakemake-snpmasked-refgenome Public

    Snakemake workflow to inject SNPs from a strain into a the mouse refrence genome and create a cellranger index

    Python 1

  6. snakemake-cellranger snakemake-cellranger Public

    Snakemake workflow to run cellranger on multiple samples within the ODCF database

    Jupyter Notebook

Repositories

Showing 10 of 10 repositories
  • odomlab2/fourcore_transloc’s past year of commit activity
    Python 0 0 0 0 Updated Jul 25, 2024
  • sci-rocket Public

    Snakemake workflow for (pre-)processing sci-RNA-seq3 data

    odomlab2/sci-rocket’s past year of commit activity
    Python 4 MIT 3 3 0 Updated Jul 15, 2024
  • scir Public

    Analysis toolkit for sci-RNA-seqv3 data.

    odomlab2/scir’s past year of commit activity
    R 0 GPL-3.0 0 4 0 Updated May 31, 2024
  • manuscript_scirocket Public

    Accompanying code to sci-rocket manuscript

    odomlab2/manuscript_scirocket’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 11, 2024
  • Single-Mitosis-LSE Public

    R scripts and supplemental tables for Ginno et al., 2024

    odomlab2/Single-Mitosis-LSE’s past year of commit activity
    R 1 0 0 0 Updated Mar 6, 2024
  • odomlab2/snakemake-capturehic’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 14, 2024
  • molgenis-docker Public Forked from molgenis/docker

    Dockerfiles and docker-compose for MOLGENIS

    odomlab2/molgenis-docker’s past year of commit activity
    Dockerfile 0 LGPL-3.0 17 0 0 Updated Jun 14, 2023
  • snakemake-cellranger Public

    Snakemake workflow to run cellranger on multiple samples within the ODCF database

    odomlab2/snakemake-cellranger’s past year of commit activity
    Jupyter Notebook 0 0 2 1 Updated Mar 30, 2023
  • snakemake-snpmasked-refgenome Public

    Snakemake workflow to inject SNPs from a strain into a the mouse refrence genome and create a cellranger index

    odomlab2/snakemake-snpmasked-refgenome’s past year of commit activity
    Python 0 1 0 0 Updated May 2, 2022
  • metadata-submission Public

    Track the metadata submission spreadsheet and related files

    odomlab2/metadata-submission’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Aug 2, 2021

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