FIX: LTS package build

.circleci/config.yml

@@ -344,8 +344,8 @@ jobs:
       image: ubuntu-2004:202104-01
     working_directory: /tmp/ds005
     environment:
-      - FS_LICENSE: /tmp/fslicense/license.txt
-      - DATASET: ds005
+      FS_LICENSE: /tmp/fslicense/license.txt
+      DATASET: ds005
     steps:
       - checkout:
           path: /home/circleci/src/fmriprep
@@ -583,8 +583,8 @@ jobs:
       image: ubuntu-2004:202104-01
     working_directory: /tmp/ds054
     environment:
-      - FS_LICENSE: /tmp/fslicense/license.txt
-      - DATASET: ds054
+      FS_LICENSE: /tmp/fslicense/license.txt
+      DATASET: ds054
     steps:
       - checkout:
           path: /home/circleci/src/fmriprep
@@ -751,8 +751,8 @@ jobs:
       image: ubuntu-2004:202104-01
     working_directory: /tmp/ds210
     environment:
-      - FS_LICENSE: /tmp/fslicense/license.txt
-      - DATASET: ds210
+      FS_LICENSE: /tmp/fslicense/license.txt
+      DATASET: ds210
     steps:
       - checkout:
           path: /home/circleci/src/fmriprep
@@ -1015,107 +1015,54 @@ jobs:
 
   test_deploy_pypi:
     docker:
-      - image: circleci/python:3.8.5
+      - image: cimg/python:3.7
     working_directory: /tmp/src/fmriprep
     steps:
       - checkout
       - run:
-          name: Build fMRIPrep
+          name: Inject version into source directory and wrapper source
           command: |
-            python -m pip install --user twine  # For use in checking distributions
             THISVERSION=$( python get_version.py )
             THISVERSION=${THISVERSION%.dirty*}
             THISVERSION=${CIRCLE_TAG:-$THISVERSION}
-            virtualenv --python=python build
-            source build/bin/activate
-            pip install --upgrade "pip>=19.1" numpy
-            echo "${CIRCLE_TAG:-$THISVERSION}" > fmriprep/VERSION
-            python setup.py sdist
-            python -m pip wheel --no-deps -w dist/ .
-      - store_artifacts:
-          path: /tmp/src/fmriprep/dist
+            echo "${THISVERSION}" > fmriprep/VERSION
+            sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'${THISVERSION}'/" wrapper/fmriprep_docker.py
       - run:
-          name: Check sdist distribution
-          command: |
-            THISVERSION=$( python get_version.py )
-            THISVERSION=${THISVERSION%.dirty*}
-            THISVERSION=${CIRCLE_TAG:-$THISVERSION}
-            python -m twine check dist/fmriprep*.tar.gz
-            virtualenv --python=python sdist
-            source sdist/bin/activate
-            python -m pip install --upgrade "pip>=19.1" numpy
-            python -m pip install dist/fmriprep*.tar.gz
-            which fmriprep | grep sdist\\/bin
-            INSTALLED_VERSION=$(fmriprep --version)
-            INSTALLED_VERSION=${INSTALLED_VERSION%$'\r'}
-            INSTALLED_VERSION=${INSTALLED_VERSION#*"fMRIPrep v"}
-            echo "VERSION: \"$THISVERSION\""
-            echo "INSTALLED: \"$INSTALLED_VERSION\""
-            test "$INSTALLED_VERSION" = "$THISVERSION"
-      - run:
-          name: Check wheel distribution
-          command: |
-            THISVERSION=$( python get_version.py )
-            THISVERSION=${THISVERSION%.dirty*}
-            THISVERSION=${CIRCLE_TAG:-$THISVERSION}
-            python -m twine check dist/fmriprep*.whl
-            virtualenv --python=python wheel
-            source wheel/bin/activate
-            python -m pip install dist/fmriprep*.whl
-            which fmriprep | grep wheel\\/bin
-            INSTALLED_VERSION=$(fmriprep --version)
-            INSTALLED_VERSION=${INSTALLED_VERSION%$'\r'}
-            INSTALLED_VERSION=${INSTALLED_VERSION#*"fMRIPrep v"}
-            echo "VERSION: \"$THISVERSION\""
-            echo "INSTALLED: \"$INSTALLED_VERSION\""
-            test "$INSTALLED_VERSION" = "$THISVERSION"
-      - run:
-          name: Build fmriprep-docker
+          name: Build fMRIPrep
           command: |
-            THISVERSION=$( python get_version.py )
-            THISVERSION=${THISVERSION%.dirty*}
-            cd wrapper
-            virtualenv --python=python build
-            source build/bin/activate
-            python -m pip install --upgrade "pip>=19.1"
-            sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'${CIRCLE_TAG:-$THISVERSION}'/" fmriprep_docker.py
-            python setup.py sdist
-            python -m pip wheel --no-deps -w dist/ .
+            pipx run build .
+            pipx run build wrapper/
+      - store_artifacts:
+          path: /tmp/src/fmriprep/dist
       - store_artifacts:
           path: /tmp/src/fmriprep/wrapper/dist
+      - run:
+          name: Twine check fMRIPrep
+          command: pipx run twine check dist/* wrapper/dist/*
 
   deploy_pypi:
     docker:
-      - image: circleci/python:3.8.5
+      - image: cimg/python:3.7
     working_directory: /tmp/src/fmriprep
     steps:
       - checkout
       - run:
-          name: Build fMRIPrep
+          name: Inject version into source directory and wrapper source
           command: |
             THISVERSION=$( python get_version.py )
-            virtualenv --python=python build
-            source build/bin/activate
-            python -m pip install --upgrade "pip>=19.1"
-            echo "${CIRCLE_TAG:-$THISVERSION}" > fmriprep/VERSION
-            python setup.py sdist
-            python -m pip wheel --no-deps -w dist/ .
+            THISVERSION=${THISVERSION%.dirty*}
+            THISVERSION=${CIRCLE_TAG:-$THISVERSION}
+            echo "${THISVERSION}" > fmriprep/VERSION
+            sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'${THISVERSION}'/" wrapper/fmriprep_docker.py
       - run:
-          name: Build fmriprep-docker
+          name: Build fMRIPrep
           command: |
-            THISVERSION=$( python get_version.py )
-            cd wrapper
-            virtualenv --python=python build
-            source build/bin/activate
-            python -m pip install --upgrade "pip>=19.1"
-            sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'${CIRCLE_TAG:-$THISVERSION}'/" fmriprep_docker.py
-            python setup.py sdist
-            python -m pip wheel --no-deps -w dist/ .
+            pipx run build .
+            pipx run build wrapper/
       - run:
           name: Upload packages to PyPI
           command: |
-            python -m pip install --user twine
-            python -m twine upload dist/fmriprep* wrapper/dist/fmriprep*
+            pipx run twine upload dist/fmriprep* wrapper/dist/fmriprep*
 
   deployable:
     docker:

Dockerfile

@@ -127,6 +127,9 @@ ENV PATH="/usr/local/miniconda/bin:$PATH" \
     PYTHONNOUSERSITE=1
 
 COPY docker/files/environment.yml /usr/local/etc/environment.yml
+COPY docker/files/repo-anaconda-com-chain.pem /usr/local/etc/repo-anaconda-com-chain.pem
+
+RUN conda config --set ssl_verify /usr/local/etc/repo-anaconda-com-chain.pem
 
 # Installing precomputed python packages
 RUN conda env update -n base -f /usr/local/etc/environment.yml; sync && \

docker/files/repo-anaconda-com-chain.pem

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