Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ENH: Port bbregister T1-to-dwi registration from fmriprep #125

Merged
merged 9 commits into from
Dec 4, 2020
Prev Previous commit
Next Next commit
fix: input to bbr should be a *b=0* reference
  • Loading branch information
oesteban committed Dec 4, 2020
commit bf3299520c4027eb6b61a9097f73e5918aae989e
4 changes: 3 additions & 1 deletion dmriprep/workflows/base.py
Original file line number Diff line number Diff line change
@@ -385,7 +385,9 @@ def _bold_reg_suffix(fallback):
("outputnode.t1w_mask", "in_mask"),
]),
# BBRegister
(split_info, bbr_wf, [("dwi_file", "inputnode.in_file")]),
(early_b0ref_wf, bbr_wf, [
("outputnode.dwi_reference", "inputnode.in_file")
]),
(t1w_brain, bbr_wf, [("out_file", "inputnode.t1w_brain")]),
(anat_preproc_wf, bbr_wf, [("outputnode.t1w_dseg", "inputnode.t1w_dseg")]),
(fsinputnode, bbr_wf, [("subjects_dir", "inputnode.subjects_dir")]),