Merge pull request #1989 from micro-manager/dependency_update_from_py… #272
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| name: apidoc | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| mmdevice-doxygen: | |
| name: MMDevice Doxygen | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| path: micro-manager | |
| submodules: true | |
| - name: Install Doxygen | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install doxygen | |
| - name: Build HTML | |
| run: | | |
| cd micro-manager | |
| mkdir -p doxygen/out/MMDevice | |
| doxygen doxygen/MMDevice | |
| tar cf ../html.tar -C doxygen/out/MMDevice/html . | |
| - uses: actions/checkout@v2 | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| with: | |
| repository: micro-manager/apidoc | |
| ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }} | |
| fetch-depth: 0 | |
| path: apidoc | |
| - name: Publish HTML | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| run: | | |
| cd apidoc | |
| ./prepare_pages_branch.sh MMDevice/latest | |
| tar xf ../html.tar | |
| git add . | |
| ./publish_pages_as_bot.sh MMDevice/latest | |
| mmcore-doxygen: | |
| name: MMCore Doxygen | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| path: micro-manager | |
| submodules: true | |
| - name: Install Doxygen | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install doxygen | |
| - name: Build HTML | |
| run: | | |
| cd micro-manager | |
| mkdir -p doxygen/out/MMCore | |
| doxygen doxygen/MMCore | |
| tar cf ../html.tar -C doxygen/out/MMCore/html . | |
| - uses: actions/checkout@v2 | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| with: | |
| repository: micro-manager/apidoc | |
| ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }} | |
| fetch-depth: 0 | |
| path: apidoc | |
| - name: Publish HTML | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| run: | | |
| cd apidoc | |
| ./prepare_pages_branch.sh MMCore/latest | |
| tar xf ../html.tar | |
| git add . | |
| ./publish_pages_as_bot.sh MMCore/latest | |
| mmcorej-javadoc: | |
| name: mmcorej Javadoc | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| path: micro-manager | |
| submodules: true | |
| - name: Install tools and dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install build-essential autoconf automake libtool \ | |
| autoconf-archive pkg-config doxygen | |
| sudo apt-get -y install libpcre3-dev # For SWIG-3 | |
| - name: Cache SWIG-3 | |
| id: cache-swig-3 | |
| uses: actions/cache@v2 | |
| with: | |
| path: swig-3.0.12 | |
| key: mmstudio-javadoc-swig-3.0.12 | |
| - name: Build SWIG-3 | |
| if: steps.cache-swig-3.outputs.cache-hit != 'true' | |
| run: | | |
| curl -LO http://prdownloads.sourceforge.net/swig/swig-3.0.12.tar.gz | |
| tar xzf swig-3.0.12.tar.gz | |
| cd swig-3.0.12 | |
| ./configure | |
| make -j3 | |
| - name: Install SWIG-3 | |
| run: | | |
| cd swig-3.0.12 | |
| sudo make install | |
| - name: Configure and run SWIG | |
| run: | | |
| cd micro-manager | |
| ./autogen.sh | |
| ./configure JAVA_HOME=$JAVA_HOME_8_X64 | |
| make -C mmCoreAndDevices/MMCoreJ_wrap MMCoreJ_wrap.h | |
| - name: Build Javadoc | |
| run: | | |
| cd micro-manager | |
| make dox | |
| cd swig-doc-converter | |
| PATH="$JAVA_HOME_8_X64/bin:$PATH" ./convert | |
| tar cf ../../html.tar -C javadoc . | |
| - uses: actions/checkout@v2 | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| with: | |
| repository: micro-manager/apidoc | |
| ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }} | |
| fetch-depth: 0 | |
| path: apidoc | |
| - name: Publish Javadoc | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| run: | | |
| cd apidoc | |
| ./prepare_pages_branch.sh mmcorej/latest | |
| tar xf ../html.tar | |
| git add . | |
| ./publish_pages_as_bot.sh mmcorej/latest | |
| mmstudio-javadoc: | |
| name: mmstudio Javadoc | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| path: micro-manager | |
| submodules: true | |
| - name: Install tools and dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install build-essential autoconf automake libtool \ | |
| autoconf-archive pkg-config | |
| sudo apt-get -y install libboost-all-dev | |
| sudo apt-get -y install libpcre3-dev # For SWIG-3 | |
| - name: Cache SWIG-3 | |
| id: cache-swig-3 | |
| uses: actions/cache@v2 | |
| with: | |
| path: swig-3.0.12 | |
| key: mmstudio-javadoc-swig-3.0.12 | |
| - name: Build SWIG-3 | |
| if: steps.cache-swig-3.outputs.cache-hit != 'true' | |
| run: | | |
| curl -LO http://prdownloads.sourceforge.net/swig/swig-3.0.12.tar.gz | |
| tar xzf swig-3.0.12.tar.gz | |
| cd swig-3.0.12 | |
| ./configure | |
| make -j3 | |
| - name: Install SWIG-3 | |
| run: | | |
| cd swig-3.0.12 | |
| sudo make install | |
| - name: Cache 3rdpartypublic classext | |
| id: cache-3ppce | |
| uses: actions/cache@v2 | |
| with: | |
| path: 3rdpartypublic | |
| key: mmstudio-javadoc-3ppce-${{ hashFiles('micro-manager/buildscripts/ivy.xml') }} | |
| - name: Check out 3rdpartypublic classext | |
| if: steps.cache-3ppce.outputs.cache-hit != 'true' | |
| run: | | |
| # TEMPORARY HACK to accept specific expired TLS certificate | |
| mkdir -p ~/.subversion/auth/svn.ssl.server | |
| cp micro-manager/.github/accept-expired-valelab4-svn \ | |
| ~/.subversion/auth/svn.ssl.server/7abd63f9a2ebe9418dc77976036ea792 | |
| # END TEMPORARY HACK | |
| mkdir 3rdpartypublic | |
| svn co https://valelab4.ucsf.edu/svn/3rdpartypublic/classext \ | |
| 3rdpartypublic/classext | |
| - name: Cache Ivy cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.ivy2 | |
| key: mmstudio-javadoc-ivy-${{ hashFiles('micro-manager/buildscripts/ivy*.xml') }} | |
| - name: Build parts of micro-manager | |
| run: | | |
| cd micro-manager | |
| ./autogen.sh | |
| ./configure JAVA_HOME=$JAVA_HOME_8_X64 | |
| make fetchdeps | |
| make -C buildscripts/AntExtensions | |
| make -C mmCoreAndDevices/MMDevice -j3 | |
| make -C mmCoreAndDevices/MMCore -j3 | |
| make -C mmCoreAndDevices/MMCoreJ_wrap | |
| make -C mmstudio | |
| - name: Build Javadoc | |
| run: | | |
| cd micro-manager/mmstudio | |
| PATH="$JAVA_HOME_8_X64/bin:$PATH" make javadoc | |
| tar cf ../../html.tar -C doc . | |
| - uses: actions/checkout@v2 | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| with: | |
| repository: micro-manager/apidoc | |
| ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }} | |
| fetch-depth: 0 | |
| path: apidoc | |
| - name: Publish Javadoc | |
| if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main' | |
| run: | | |
| cd apidoc | |
| ./prepare_pages_branch.sh mmstudio/latest | |
| tar xf ../html.tar | |
| git add . | |
| ./publish_pages_as_bot.sh mmstudio/latest |