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apidoc.yml
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name: apidoc
on:
pull_request:
push:
branches:
- main
jobs:
mmdevice-doxygen:
name: MMDevice Doxygen
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
path: micro-manager
submodules: true
- name: Install Doxygen
run: |
sudo apt-get update
sudo apt-get -y install doxygen
- name: Build HTML
run: |
cd micro-manager
mkdir -p doxygen/out/MMDevice
doxygen doxygen/MMDevice
tar cf ../html.tar -C doxygen/out/MMDevice/html .
- uses: actions/checkout@v2
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
with:
repository: micro-manager/apidoc
ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }}
fetch-depth: 0
path: apidoc
- name: Publish HTML
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
run: |
cd apidoc
./prepare_pages_branch.sh MMDevice/latest
tar xf ../html.tar
git add .
./publish_pages_as_bot.sh MMDevice/latest
mmcore-doxygen:
name: MMCore Doxygen
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
path: micro-manager
submodules: true
- name: Install Doxygen
run: |
sudo apt-get update
sudo apt-get -y install doxygen
- name: Build HTML
run: |
cd micro-manager
mkdir -p doxygen/out/MMCore
doxygen doxygen/MMCore
tar cf ../html.tar -C doxygen/out/MMCore/html .
- uses: actions/checkout@v2
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
with:
repository: micro-manager/apidoc
ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }}
fetch-depth: 0
path: apidoc
- name: Publish HTML
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
run: |
cd apidoc
./prepare_pages_branch.sh MMCore/latest
tar xf ../html.tar
git add .
./publish_pages_as_bot.sh MMCore/latest
mmcorej-javadoc:
name: mmcorej Javadoc
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
path: micro-manager
submodules: true
- name: Install tools and dependencies
run: |
sudo apt-get update
sudo apt-get -y install build-essential autoconf automake libtool \
autoconf-archive pkg-config doxygen
sudo apt-get -y install libpcre3-dev # For SWIG-3
- name: Cache SWIG-3
id: cache-swig-3
uses: actions/cache@v2
with:
path: swig-3.0.12
key: mmstudio-javadoc-swig-3.0.12
- name: Build SWIG-3
if: steps.cache-swig-3.outputs.cache-hit != 'true'
run: |
curl -LO http://prdownloads.sourceforge.net/swig/swig-3.0.12.tar.gz
tar xzf swig-3.0.12.tar.gz
cd swig-3.0.12
./configure
make -j3
- name: Install SWIG-3
run: |
cd swig-3.0.12
sudo make install
- name: Configure and run SWIG
run: |
cd micro-manager
./autogen.sh
./configure JAVA_HOME=$JAVA_HOME_8_X64
make -C mmCoreAndDevices/MMCoreJ_wrap MMCoreJ_wrap.h
- name: Build Javadoc
run: |
cd micro-manager
make dox
cd swig-doc-converter
PATH="$JAVA_HOME_8_X64/bin:$PATH" ./convert
tar cf ../../html.tar -C javadoc .
- uses: actions/checkout@v2
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
with:
repository: micro-manager/apidoc
ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }}
fetch-depth: 0
path: apidoc
- name: Publish Javadoc
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
run: |
cd apidoc
./prepare_pages_branch.sh mmcorej/latest
tar xf ../html.tar
git add .
./publish_pages_as_bot.sh mmcorej/latest
mmstudio-javadoc:
name: mmstudio Javadoc
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
path: micro-manager
submodules: true
- name: Install tools and dependencies
run: |
sudo apt-get update
sudo apt-get -y install build-essential autoconf automake libtool \
autoconf-archive pkg-config
sudo apt-get -y install libboost-all-dev
sudo apt-get -y install libpcre3-dev # For SWIG-3
- name: Cache SWIG-3
id: cache-swig-3
uses: actions/cache@v2
with:
path: swig-3.0.12
key: mmstudio-javadoc-swig-3.0.12
- name: Build SWIG-3
if: steps.cache-swig-3.outputs.cache-hit != 'true'
run: |
curl -LO http://prdownloads.sourceforge.net/swig/swig-3.0.12.tar.gz
tar xzf swig-3.0.12.tar.gz
cd swig-3.0.12
./configure
make -j3
- name: Install SWIG-3
run: |
cd swig-3.0.12
sudo make install
- name: Cache 3rdpartypublic classext
id: cache-3ppce
uses: actions/cache@v2
with:
path: 3rdpartypublic
key: mmstudio-javadoc-3ppce-${{ hashFiles('micro-manager/buildscripts/ivy.xml') }}
- name: Check out 3rdpartypublic classext
if: steps.cache-3ppce.outputs.cache-hit != 'true'
run: |
# TEMPORARY HACK to accept specific expired TLS certificate
mkdir -p ~/.subversion/auth/svn.ssl.server
cp micro-manager/.github/accept-expired-valelab4-svn \
~/.subversion/auth/svn.ssl.server/7abd63f9a2ebe9418dc77976036ea792
# END TEMPORARY HACK
mkdir 3rdpartypublic
svn co https://valelab4.ucsf.edu/svn/3rdpartypublic/classext \
3rdpartypublic/classext
- name: Cache Ivy cache
uses: actions/cache@v2
with:
path: ~/.ivy2
key: mmstudio-javadoc-ivy-${{ hashFiles('micro-manager/buildscripts/ivy*.xml') }}
- name: Build parts of micro-manager
run: |
cd micro-manager
./autogen.sh
./configure JAVA_HOME=$JAVA_HOME_8_X64
make fetchdeps
make -C buildscripts/AntExtensions
make -C mmCoreAndDevices/MMDevice -j3
make -C mmCoreAndDevices/MMCore -j3
make -C mmCoreAndDevices/MMCoreJ_wrap
make -C mmstudio
- name: Build Javadoc
run: |
cd micro-manager/mmstudio
PATH="$JAVA_HOME_8_X64/bin:$PATH" make javadoc
tar cf ../../html.tar -C doc .
- uses: actions/checkout@v2
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
with:
repository: micro-manager/apidoc
ssh-key: ${{ secrets.SSH_KEY_DEPLOY_TO_APIDOC }}
fetch-depth: 0
path: apidoc
- name: Publish Javadoc
if: github.repository == 'micro-manager/micro-manager' && github.ref == 'refs/heads/main'
run: |
cd apidoc
./prepare_pages_branch.sh mmstudio/latest
tar xf ../html.tar
git add .
./publish_pages_as_bot.sh mmstudio/latest