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New-new schema#695

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apeltzer merged 36 commits intonf-core:new-new-schemanf-core/tools:new-new-schemafrom ewels:new-new-schemaewels/nf-core-tools:new-new-schemaCopy head branch name to clipboardJul 28, 2020

+891-760

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Commits on Jul 23, 2020

• Lint TODO - ignore editor files

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• Changelog

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• Use new Rich syntax for markup logs.

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Commits on Jul 27, 2020

• Merge pull request nf-core#692 from ewels/rich-cleaner-logging

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• update json-schema template to new structure

  

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• Don't flatten the schema

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• Schema - fix validation for new 'definitions' grouping

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• Count the parameters when validating a schema

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• nf-core schema validate - use position arg for input JSON

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• Schema build to work with new 'definitions' groups

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• Schema validate - check at least one parameter

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• Update tests for nf-core schema

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• Fix typo in bump_versions tests

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• Get download and lint tests working again

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• Schema validate - check for duplicate param IDs in subschema

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• Schema validate: check definitions and allOf

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• Get nf-core launch working with new schema structure

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• Update tests for new launch modifications

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• List tests - avoid messing with NXF_ASSETS env var

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• added some more docs to the lint errors markdown

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• Change URL for pipeline schema builder

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• Schema - fix behaviour of using the defaults dict to list discovered schema params

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• Better loading text screen-writing for function that waits for the web

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• Add some assertion test messages to schema

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• Don't print lint results when bumping versions

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• Update example outputs in README

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• Merge pull request nf-core#689 from ewels/lint-ignore-editorfiles

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• Rename copypasta error in GitHub action

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Commits on Jul 28, 2020

• Extra schema linting checks

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• Move dockerhub GitHub action into its own file

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• Fix dodgy .gitignore file patterns

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• Update nf_core/pipeline-template/{{cookiecutter.name_noslash}}/.github/workflows/push_dockerhub.yml

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• Merge pull request nf-core#697 from ewels/dockerhub_ci_actions

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• Merge branch 'master' into new-new-schema

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• Fix minimal example schema file

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• Relax cli test slightly

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