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Dev -> Master for 3.11 release #966
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… (Lexogen kits as examples for inline UMIs in R1).
Add further example parameters to the UMI section of the manual.
This proposed section provides parameters for the QuantSeq FWD 3' mRNA sequencing protocol.
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS_GENOME was mistakenly written as BAM_DEDUP_STATS_SAMTOOLS_UMI_UMITOOLS_GENOME, causing the workflow to error out in case the UMI option was set when using HISAT2. Fixes #929.
Adding recommended parameters for 3' tag RNA-seq (e.g. QuantSeq) data
Fix typo preventing the use of UMI processing with HISAT2
Cache data for GHA
…rgs in the STAR module.
…nique(false) in contrast returns a new, deduplicated list and leaves the params intact.
Linting with the new version of Black 23.1
…licates Deduplication for the ext.args of the STAR module
Python linting (
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The version already includes the "v" prefix, so no need to add it in the json. I also fixed the name, which was hardcoded to a different workflow.
Tower actions testing
hotfix: Self hosted tests March 23
Remove self-hosted runner definitions in Actions CI
@nf-core-bot fix linting |
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