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Release 1.4#121

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fbdtemme wants to merge 49 commits intomasternf-core/pixelator:masterfrom devnf-core/pixelator:devCopy head branch name to clipboard

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Commits

Commits on Oct 8, 2024

• Template update for nf-core/tools version 3.0.0

  nf-core-bot

  committed
  858d415

Commits on Oct 9, 2024

• Template update for nf-core/tools version 3.0.1

  nf-core-bot

  committed
  7be24d4

Commits on Oct 11, 2024

• Template update for nf-core/tools version 3.0.2

  nf-core-bot

  committed
  7ae55f9

Commits on Oct 21, 2024

• Merge branch 'dev' into nf-core-template-merge-3.0.2

  fbdtemme

  committed
  a2e141a

• Update cat/fastq module

  fbdtemme

  committed
  f82e485

• Remove duplicated lines form old template

  fbdtemme

  committed
  769d9ab

• Update logo

  fbdtemme

  committed
  6c9acca

• Merge pull request #111 from nf-core/nf-core-template-merge-3.0.2

  Show description for 1d0d302
  fbdtemme

  authored
  1d0d302

• Add graph refinement options and remove unused use_counts

  fbdtemme

  committed
  a36aa73

• Update CHANGELOG

  fbdtemme

  committed
  789abc7

• Ignore linting failure on logo

  fbdtemme

  committed
  fe74a16

• Fix stray space and typo

  fbdtemme

  committed
  c644129

• Add --max-edges-to-split parameter to CHANGELOG

  fbdtemme

  committed
  0e8759f

• Fix parameter names in CHANGELOG

  fbdtemme

  committed
  c359165

• Merge pull request #112 from nf-core/feat/add-graph-refinement-options

  Show description for 95d8eed
  fbdtemme

  authored
  95d8eed

Commits on Oct 29, 2024

• Fix validation check after nf-schema 2 update

  fbdtemme

  committed
  ad31578

• Fix non existence check on input_basedir

  fbdtemme

  committed
  3827a3e

• Update CHANGELOG

  fbdtemme

  committed
  0e7e0c2

• Merge pull request #113 from nf-core/fix-panel-file-validation

  Show description for a2a6c1c
  fbdtemme

  authored
  a2a6c1c

Commits on Dec 10, 2024

• Remove --save_recovered_components options for graph outputs

  fbdtemme

  committed
  3067ff3

• Remove reference to --save_recovered_components from nextflow_schema.json

  fbdtemme

  committed
  2b52d00

• Fix test config defaults

  fbdtemme

  committed
  37cc14d

• Update help for --dynamic_filter

  fbdtemme

  committed
  ed7e5a6

Commits on Dec 11, 2024

• Remove --min-size from test profile

  fbdtemme

  committed
  7d6510e

• Fix linter warning

  fbdtemme

  committed
  55927f8

• Merge pull request #114 from nf-core/feat/remove-graph-components-recovered

  Show description for 0777f78
  fbdtemme

  authored
  0777f78

• Update images to pixelator 0.19

  fbdtemme

  committed
  e0ecbe9

• Update nf-core subworkflows

  fbdtemme

  committed
  a580cdf

• Reduce --min-size filter in test_panel_v2 profile

  fbdtemme

  committed
  1811faa

• Update CHANGELOG

  fbdtemme

  committed
  f6f937d

• Merge pull request #115 from nf-core/update-containers

  Show description for e1fd214
  fbdtemme

  authored
  e1fd214

• Bump version from 1.4.0dev to 1.4.0

  fbdtemme

  committed
  1559e09

Commits on Dec 12, 2024

• Template update for nf-core/tools version 3.1.0

  nf-core-bot

  committed
  f36120b

• Merge pull request #116 from nf-core/bump-version

  Show description for 3b80478
  fbdtemme

  authored
  3b80478

Commits on Dec 13, 2024

• Merge branch 'dev' into nf-core-template-merge-3.1.0

  fbdtemme

  committed
  dd40572

• Sync some nf-core template files

  fbdtemme

  committed
  e15a0d1

• Fix missing modules.config include

  fbdtemme

  committed
  41f8bef

• Fix some linter errors

  fbdtemme

  committed
  5d7a14b

• Merge pull request #117 from nf-core/nf-core-template-merge-3.1.0

  Show description for c22e520
  fbdtemme

  authored
  c22e520

• Update metromap and CHANGELOG

  fbdtemme

  committed
  444ec7d

• Bump conda versions

  fbdtemme

  committed
  c6205e6

• Merge pull request #118 from PixelgenTechnologies/update-metromap-v1.4

  Show description for 2593897
  fbdtemme

  authored
  2593897

• Add process_long labels to AMPLICON and COLLAPSE

  fbdtemme

  committed
  e58bee0

• Fix CHANGELOG pr number

  fbdtemme

  committed
  c5b8472

• Merge pull request #120 from PixelgenTechnologies/update-labels

  Show description for 405a62b
  fbdtemme

  authored
  405a62b

• Fix 1.4 version in CHANGELOG

  fbdtemme

  committed
  4cdeef6

Commits on Dec 19, 2024

• fix: double singularity pixelator container reference

  ambarrio

  committed
  4072406

Commits on Jan 3, 2025

• Revert move of 'conf/modules.config` from nextflow.config to conf/base.config

  fbdtemme

  committed
  4058d84

• Remove empty config file

  fbdtemme

  committed
  ca529a0