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Added cobra-meta and changed workflow figure #236

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Added cobra-meta and changed workflow figure

Added cobra-meta and changed workflow figure #236

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Job Run time
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7s
workflows/phageannotator/tests/skip_virus_clustering.nf.test docker NF-latest-everything
22s
workflows/phageannotator/tests/full_test.nf.test docker NF-latest-everything
43s
subworkflows/local/fastq_fasta_contig_extension_cobra/tests/main.nf.test docker NF-latest-everything
1m 4s
modules/local/mash/paste/tests/main.nf.test docker NF-latest-everything
2m 37s
workflows/phageannotator/tests/skip_checkv.nf.test docker NF-latest-everything
41s
workflows/phageannotator/tests/run_genomad_taxonomy.nf.test docker NF-latest-everything
43s
modules/nf-core/mash/sketch/tests/main.nf.test docker NF-latest-everything
2m 47s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything
3m 40s
modules/local/viromeqc/viromeqc/tests/main.nf.test docker NF-latest-everything
3m 28s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything
2m 35s
subworkflows/local/fasta_phage_host_iphop/tests/main.nf.test docker NF-latest-everything
1m 50s
modules/local/anicluster/anicalc/tests/main.nf.test docker NF-latest-everything
3m 26s
tests/main.nf.test docker NF-latest-everything
1m 5s
modules/nf-core/pharokka/installdatabases/tests/main.nf.test docker NF-latest-everything
3m 12s
workflows/phageannotator/tests/run_cobra.nf.test docker NF-latest-everything
38s
modules/nf-core/bowtie2/align/tests/main.nf.test docker NF-latest-everything
3m 13s
subworkflows/local/fasta_virus_classification_genomad/tests/main.nf.test docker NF-latest-everything
1m 45s
modules/nf-core/checkv/downloaddatabase/tests/main.nf.test docker NF-latest-everything
3m 9s
modules/local/anicluster/aniclust/tests/main.nf.test docker NF-latest-everything
4m 17s
modules/local/seqkit/seq/tests/main.nf.test docker NF-latest-everything
2m 27s
subworkflows/local/fastq_fasta_reference_containment_mash/tests/main.nf.test docker NF-latest-everything
1m 39s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
1m 44s
modules/nf-core/blast/blastn/tests/main.nf.test docker NF-latest-everything
3m 1s
modules/nf-core/pharokka/pharokka/tests/main.nf.test docker NF-latest-everything
4m 18s
workflows/phageannotator/tests/run_reference_no_reference.nf.test docker NF-latest-everything
37s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
1m 23s
modules/local/viromeqc/install/tests/main.nf.test docker NF-latest-everything
4m 49s
subworkflows/nf-core/fastq_align_bowtie2/tests/main.nf.test docker NF-latest-everything
1m 26s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
1m 40s
modules/nf-core/bowtie2/build/tests/main.nf.test docker NF-latest-everything
2m 58s
workflows/phageannotator/tests/run_bacphlip.nf.test docker NF-latest-everything
38s
modules/local/anicluster/extractreps/tests/main.nf.test docker NF-latest-everything
3m 13s
modules/nf-core/mash/screen/tests/main.nf.test docker NF-latest-everything
2m 52s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
4m 17s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything
1m 28s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
3m 3s
modules/nf-core/blast/makeblastdb/tests/main.nf.test docker NF-latest-everything
2m 39s
subworkflows/local/fasta_phage_function_pharokka/tests/main.nf.test docker NF-latest-everything
2m 55s
modules/nf-core/checkv/endtoend/tests/main.nf.test docker NF-latest-everything
3m 49s
workflows/phageannotator/tests/run_iphop.nf.test docker NF-latest-everything
34s
workflows/phageannotator/tests/run_reference.nf.test docker NF-latest-everything
30s
modules/nf-core/bacphlip/tests/main.nf.test docker NF-latest-everything
2m 38s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything
4m 5s
subworkflows/local/fastq_virus_enrichment_viromeqc/tests/main.nf.test docker NF-latest-everything
2m 55s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
4m 31s
modules/nf-core/cobrameta/tests/main.nf.test docker NF-latest-everything
3m 21s
subworkflows/local/fasta_all_v_all_blast/tests/main.nf.test docker NF-latest-everything
2m 48s
modules/local/instrain/stb/tests/main.nf.test docker NF-latest-everything
2m 55s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything
3m 30s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything
2m 40s
modules/nf-core/instrain/profile/tests/main.nf.test docker NF-latest-everything
3m 10s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
2m 23s
subworkflows/local/fasta_virus_quality_checkv/tests/main.nf.test docker NF-latest-everything
2m 44s
modules/nf-core/genomad/download/tests/main.nf.test docker NF-latest-everything
3m 54s
workflows/phageannotator/tests/skip_genomad.nf.test docker NF-latest-everything
1m 21s
modules/local/appendscreenhits/tests/main.nf.test docker NF-latest-everything
3m 23s
modules/local/coverm/contig/tests/main.nf.test docker NF-latest-everything
2m 37s
modules/nf-core/cat/cat/tests/main.nf.test docker NF-latest-everything
3m 25s
modules/local/extractviralassemblies/tests/main.nf.test docker NF-latest-everything
3m 23s
workflows/phageannotator/tests/run_viromeqc.nf.test docker NF-latest-everything
56s
workflows/phageannotator/tests/run_instrain.nf.test docker NF-latest-everything
50s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything
2m 58s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything
1m 49s
modules/local/qualityfilterviruses/tests/main.nf.test docker NF-latest-everything
3m 12s
workflows/phageannotator/tests/run_pharokka.nf.test docker NF-latest-everything
45s
subworkflows/local/fasta_microdiversity_instrain/tests/main.nf.test docker NF-latest-everything
1m 51s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
2m 39s
workflows/phageannotator/tests/main.nf.test docker NF-latest-everything
50s
workflows/phageannotator/tests/skip_virus_clustering.nf.test docker NF-23.04
4m 59s
workflows/phageannotator/tests/full_test.nf.test docker NF-23.04
7m 0s
subworkflows/local/fastq_fasta_contig_extension_cobra/tests/main.nf.test docker NF-23.04
3m 28s
modules/local/mash/paste/tests/main.nf.test docker NF-23.04
2m 51s
workflows/phageannotator/tests/skip_checkv.nf.test docker NF-23.04
5m 6s
workflows/phageannotator/tests/run_genomad_taxonomy.nf.test docker NF-23.04
5m 2s
modules/nf-core/mash/sketch/tests/main.nf.test docker NF-23.04
2m 39s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04
2m 37s
modules/local/viromeqc/viromeqc/tests/main.nf.test docker NF-23.04
4m 44s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04
2m 38s
subworkflows/local/fasta_phage_host_iphop/tests/main.nf.test docker NF-23.04
4m 11s
modules/local/anicluster/anicalc/tests/main.nf.test docker NF-23.04
3m 14s
tests/main.nf.test docker NF-23.04
7m 45s
modules/nf-core/pharokka/installdatabases/tests/main.nf.test docker NF-23.04
3m 43s
workflows/phageannotator/tests/run_cobra.nf.test docker NF-23.04
5m 3s
modules/nf-core/bowtie2/align/tests/main.nf.test docker NF-23.04
5m 53s
subworkflows/local/fasta_virus_classification_genomad/tests/main.nf.test docker NF-23.04
7m 45s
modules/nf-core/checkv/downloaddatabase/tests/main.nf.test docker NF-23.04
4m 50s
modules/local/anicluster/aniclust/tests/main.nf.test docker NF-23.04
2m 53s
modules/local/seqkit/seq/tests/main.nf.test docker NF-23.04
3m 16s
subworkflows/local/fastq_fasta_reference_containment_mash/tests/main.nf.test docker NF-23.04
3m 6s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
2m 42s
modules/nf-core/blast/blastn/tests/main.nf.test docker NF-23.04
3m 43s
modules/nf-core/pharokka/pharokka/tests/main.nf.test docker NF-23.04
4m 34s
workflows/phageannotator/tests/run_reference_no_reference.nf.test docker NF-23.04
2m 55s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
3m 15s
modules/local/viromeqc/install/tests/main.nf.test docker NF-23.04
6m 58s
subworkflows/nf-core/fastq_align_bowtie2/tests/main.nf.test docker NF-23.04
3m 46s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
2m 39s
modules/nf-core/bowtie2/build/tests/main.nf.test docker NF-23.04
2m 44s
workflows/phageannotator/tests/run_bacphlip.nf.test docker NF-23.04
4m 58s
modules/local/anicluster/extractreps/tests/main.nf.test docker NF-23.04
2m 52s
modules/nf-core/mash/screen/tests/main.nf.test docker NF-23.04
2m 45s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
4m 51s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04
2m 50s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
2m 35s
modules/nf-core/blast/makeblastdb/tests/main.nf.test docker NF-23.04
4m 28s
subworkflows/local/fasta_phage_function_pharokka/tests/main.nf.test docker NF-23.04
7m 45s
modules/nf-core/checkv/endtoend/tests/main.nf.test docker NF-23.04
3m 33s
workflows/phageannotator/tests/run_iphop.nf.test docker NF-23.04
4m 56s
workflows/phageannotator/tests/run_reference.nf.test docker NF-23.04
4m 59s
modules/nf-core/bacphlip/tests/main.nf.test docker NF-23.04
2m 48s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04
4m 3s
subworkflows/local/fastq_virus_enrichment_viromeqc/tests/main.nf.test docker NF-23.04
3m 48s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
3m 14s
modules/nf-core/cobrameta/tests/main.nf.test docker NF-23.04
3m 10s
subworkflows/local/fasta_all_v_all_blast/tests/main.nf.test docker NF-23.04
3m 3s
modules/local/instrain/stb/tests/main.nf.test docker NF-23.04
2m 54s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04
2m 35s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04
2m 41s
modules/nf-core/instrain/profile/tests/main.nf.test docker NF-23.04
4m 26s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
3m 2s
subworkflows/local/fasta_virus_quality_checkv/tests/main.nf.test docker NF-23.04
7m 44s
modules/nf-core/genomad/download/tests/main.nf.test docker NF-23.04
3m 58s
workflows/phageannotator/tests/skip_genomad.nf.test docker NF-23.04
4m 43s
modules/local/appendscreenhits/tests/main.nf.test docker NF-23.04
3m 2s
modules/local/coverm/contig/tests/main.nf.test docker NF-23.04
4m 11s
modules/nf-core/cat/cat/tests/main.nf.test docker NF-23.04
3m 26s
modules/local/extractviralassemblies/tests/main.nf.test docker NF-23.04
3m 3s
workflows/phageannotator/tests/run_viromeqc.nf.test docker NF-23.04
7m 32s
workflows/phageannotator/tests/run_instrain.nf.test docker NF-23.04
7m 43s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
4m 28s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04
3m 51s
modules/local/qualityfilterviruses/tests/main.nf.test docker NF-23.04
3m 8s
workflows/phageannotator/tests/run_pharokka.nf.test docker NF-23.04
7m 49s
subworkflows/local/fasta_microdiversity_instrain/tests/main.nf.test docker NF-23.04
4m 7s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
3m 23s
workflows/phageannotator/tests/main.nf.test docker NF-23.04
6m 55s
confirm-pass
1s
7h 32m 14s