Code

Move filter after subsampling#814

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huddlej merged 10 commits intomasternextstrain/ncov:masterfrom move-filternextstrain/ncov:move-filterCopy head branch name to clipboardJan 5, 2022

+287-424

Commits

Commits on Dec 22, 2021

• Move filter step after subsampling

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• Don't bother compressing filtered FASTAs

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• Combine files from the aligned inputs

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• Use unmasked sequences for pango and ancestral

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• Remove references in docs to "filtered" outputs

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• Support input-specific filter settings

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• Add error message for unsupported filters

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• Fix bugs for single input builds

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• Remove preprocessing pipelines

  

  jameshadfield

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Commits on Dec 23, 2021

• Update change log to reflect breaking changes

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