Release 0.9.0

farchaab released this 23 Aug 12:02

· 174 commits to main since this release

6245176

Summary

Release to add containers, freeze conda env versions, and other small fixes

`Additions`

f9d8d50 c13af00 b01a258 Added containers in rules
86ec471 Added CITATION.cff

`Changes`

8ce623e Generate both sequence and taxonomic abundances by default
aa00806 Moved conda envs to workflow/envs/conda
d3159ab Removed utils env
88c8542 Added curl env
77241fc Added pigz env
59a4745 Froze versions in conda envs
4f79f28 Changed snakemake_run function to support --software-deployment-method from snakemake (apptainer or conda)
dba5c92 Bumped minimal python version to 3.11 (snakemake version 8 and up, requires python >=3.11)
15e9f39 Added apptainer install in Dockerfile
8ce623e Generate both taxonomic and sequence abundance CAMI profile

`Fixes`

2a7a5d8 Changed default seed (Fixes truncated bam file in mess test --bam)

`Github workflows`

afe8d09 82e3ac8 Fixed github workflow paths

Full Changelog: v0.8.3...v0.9.0

Assets 2