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farchaab/README.md

Hi there, I'm Farid 👋

Passionate Bioinformatician !

  • 🧑‍🎓 Currently doing a PhD in bioinformatics @metagenlab
  • 🧬 Genomics and metagenomics enthusiast !
  • 🏗️: Nextflow and Snakemake pipeline builder !
  • 🥅 2025 Goals: Learn more about rust
  • ⭐ Fun fact: Eager 🏊 and 🚴

🧰 Languages and Tools:

Linux

Bash

Python

Docker

Visual Studio Code

Nextflow

Snakemake


⚡ Recent Activity

  1. ❌ Closed PR #25 in metagenlab/assembly_finder
  2. 🎉 Merged PR #26 in metagenlab/assembly_finder
  3. 💪 Opened PR #26 in metagenlab/assembly_finder
  4. 🚀 Published release MeSS paper v1.0 in metagenlab/benchmark-MeSS-CAMISIM
  5. 🚀 Published release v1.0 in metagenlab/MeSS-figures

📊 Stats

farchaab's Stats

farchaab's Streak

farchaab's Top Languages

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  1. metagenlab/MeSS metagenlab/MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    Python 20 2

  2. metagenlab/assembly_finder metagenlab/assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    Python 12

  3. metagenlab/zAMP metagenlab/zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    R 8 5