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Integrate train in class #206

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merged 11 commits into from
Feb 29, 2024
Merged

Integrate train in class #206

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2f7807d
Separate LinearEmbeddingEvaluation from EmbeddingEvaluatorModel.py
niekdejonge Feb 27, 2024
23d8641
Add train_evaluator to EmbeddingEvaluatorModel.py as method
niekdejonge Feb 27, 2024
154b4cb
Fix import issues
niekdejonge Feb 27, 2024
9194ed0
Remove unused code
niekdejonge Feb 27, 2024
3d4f6bb
Add test train model
niekdejonge Feb 27, 2024
75fa5d7
isort
niekdejonge Feb 27, 2024
d03e70f
linting
niekdejonge Feb 27, 2024
6e17b14
Move inception modules down
niekdejonge Feb 28, 2024
9d0d288
Make compute_embedding_evaluations a method of the class
niekdejonge Feb 28, 2024
d02f55a
Fix test
niekdejonge Feb 28, 2024
f93aad6
Merge TimeInception class into EmbeddingEvaluatorModel
niekdejonge Feb 28, 2024
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6 changes: 4 additions & 2 deletions ms2deepscore/MS2DeepScoreEvaluated.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,12 @@
import numpy as np
from matchms import Spectrum
from matchms.similarity.BaseSimilarity import BaseSimilarity
from ms2deepscore.models.LinearEmbeddingEvaluation import \
compute_error_predictions
from ms2deepscore.models.SiameseSpectralModel import (SiameseSpectralModel,
compute_embedding_array)
from ms2deepscore.models.EmbeddingEvaluatorModel import compute_error_predictions
from .vector_operations import cosine_similarity, cosine_similarity_matrix
from ms2deepscore.vector_operations import (cosine_similarity,
cosine_similarity_matrix)


class MS2DeepScoreEvaluated(BaseSimilarity):
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